Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm37031-201ENSMUST00000195487 2530 ntBASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Cd55-201ENSMUST00000027650 2533 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Rims4-201ENSMUST00000044734 4962 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Zmynd8-203ENSMUST00000099084 5232 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Samhd1-203ENSMUST00000109549 3245 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Stk10-201ENSMUST00000102821 5026 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Atg14-202ENSMUST00000226299 3729 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Colq-201ENSMUST00000112027 2837 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Adgrv1-214ENSMUST00000224088 1492 ntBASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Pcgf2-203ENSMUST00000103149 817 ntTSL 5 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Ndufs5-203ENSMUST00000106207 680 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Ttc4-202ENSMUST00000106772 935 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Zmynd11-203ENSMUST00000110634 3824 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Wdr45-206ENSMUST00000116634 1250 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Gm11941-201ENSMUST00000119904 610 ntBASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Sec11a-204ENSMUST00000120285 875 ntTSL 3 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 4930595D18Rik-201ENSMUST00000121608 818 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Gm11831-201ENSMUST00000141538 629 ntTSL 3 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Gm29237-201ENSMUST00000186216 448 ntTSL 5 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Gm28694-201ENSMUST00000190681 722 ntTSL 3 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Gm37590-201ENSMUST00000193294 603 ntTSL 5 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Gm43184-201ENSMUST00000197247 542 ntBASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Gm42682-201ENSMUST00000198349 1265 ntBASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Gm45021-201ENSMUST00000204521 369 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Gm44545-201ENSMUST00000208262 746 ntBASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 AC122876.1-201ENSMUST00000217619 825 ntBASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Ndufs5-201ENSMUST00000030401 525 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Gm26448-201ENSMUST00000082446 203 ntBASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Mir219a-1-201ENSMUST00000083621 110 ntBASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Cd320-202ENSMUST00000087559 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Olfr1250-201ENSMUST00000099768 1139 ntAPPRIS P1 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Ces2e-201ENSMUST00000034355 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Thoc5-201ENSMUST00000038237 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Gm38089-201ENSMUST00000193585 1514 ntBASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Slc4a9-201ENSMUST00000074298 2714 ntAPPRIS P3 TSL 5 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Lsamp-201ENSMUST00000078873 2951 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Gm14005-209ENSMUST00000224993 1832 ntBASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Fgl2-201ENSMUST00000035799 3788 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Vmn2r-ps25-201ENSMUST00000202322 2321 ntBASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Ckap2-201ENSMUST00000046916 2593 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Lgals12-201ENSMUST00000079902 2590 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Gm6580-201ENSMUST00000117504 1357 ntBASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 D930048N14Rik-202ENSMUST00000117859 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 AC154171.2-201ENSMUST00000225219 2652 ntBASIC11.53□□□□□ -0.56
Sh3rf1Q69ZI1 Olfr177-202ENSMUST00000217377 2401 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 Snrpn-201ENSMUST00000059305 1932 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 Gm9035-201ENSMUST00000218318 1697 ntBASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 Gm29245-201ENSMUST00000187332 1416 ntBASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 Cish-204ENSMUST00000168260 2742 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 Zfp280b-201ENSMUST00000061617 5097 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 Cntnap4-201ENSMUST00000034225 4848 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 Nod1-201ENSMUST00000060655 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 Tesk2-201ENSMUST00000045542 3033 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 B430119L08Rik-201ENSMUST00000130054 1994 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 Zfp46-201ENSMUST00000069195 4639 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 Treml4-201ENSMUST00000059873 1744 ntAPPRIS P3 TSL 1 (best) BASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 Baiap3-206ENSMUST00000182825 3862 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 Rin1-201ENSMUST00000025818 4184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 4931429L15Rik-201ENSMUST00000159565 2037 ntAPPRIS P1 TSL 2 BASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC11.52□□□□□ -0.56
Sh3rf1Q69ZI1 Papss1-205ENSMUST00000199878 2648 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Gm32036-201ENSMUST00000221484 2638 ntTSL 2 BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Gm44573-201ENSMUST00000191753 2370 ntBASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Mdh1-201ENSMUST00000102874 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 S100a16-206ENSMUST00000107335 926 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Gm7851-201ENSMUST00000117574 323 ntBASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Gm13326-201ENSMUST00000118730 1011 ntBASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Uox-202ENSMUST00000121133 768 ntTSL 5 BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Gm14665-201ENSMUST00000122294 557 ntBASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Rpl41-203ENSMUST00000176683 437 ntAPPRIS P2 TSL 2 BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 9330159M07Rik-202ENSMUST00000180783 1044 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Dusp13-211ENSMUST00000183943 779 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Gm6546-201ENSMUST00000192096 766 ntBASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 A1cf-202ENSMUST00000224304 2968 ntAPPRIS ALT1 BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 AC135469.1-201ENSMUST00000225984 772 ntBASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Csnk2b-201ENSMUST00000025246 961 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Ms4a8a-201ENSMUST00000025636 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Cd7-201ENSMUST00000026159 982 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Tdrd9-201ENSMUST00000079009 4809 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Csnk1a1-204ENSMUST00000165123 4083 ntAPPRIS P2 TSL 1 (best) BASIC11.52□□□□□ -0.57
Sh3rf1Q69ZI1 Hexim1-201ENSMUST00000053063 3495 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms