Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Gm7538-201ENSMUST00000200918 1348 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Poc1a-211ENSMUST00000217213 1398 ntTSL 5 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Cxcr5-202ENSMUST00000179828 2824 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Spert-204ENSMUST00000169658 1474 ntAPPRIS ALT2 TSL 3 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Phf8-211ENSMUST00000168501 6359 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Atp4a-204ENSMUST00000170371 3447 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 1700019D03Rik-202ENSMUST00000114492 3565 ntAPPRIS P1 TSL 3 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Brd3-201ENSMUST00000028282 5419 ntAPPRIS P3 TSL 5 BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Oas1d-201ENSMUST00000044224 2021 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Nr2c1-202ENSMUST00000099343 2413 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
Trim3Q9R1R2 Crispld2-202ENSMUST00000108972 2928 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Slc25a48-201ENSMUST00000021971 3374 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Gm17244-201ENSMUST00000192482 3416 ntBASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Slc10a7-201ENSMUST00000034111 3595 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Hvcn1-202ENSMUST00000100747 2805 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Sparc-202ENSMUST00000108858 2115 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Rbm14-202ENSMUST00000113793 3508 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Gm13809-201ENSMUST00000117921 597 ntBASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Gm13263-201ENSMUST00000121271 838 ntBASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Tbc1d14-202ENSMUST00000124036 2765 ntTSL 5 BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 A530013C23Rik-202ENSMUST00000141923 3489 ntTSL 2 BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Chek1-202ENSMUST00000172702 3797 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Apol7a-203ENSMUST00000175919 2263 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Gm26640-201ENSMUST00000180809 3524 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Gm42997-202ENSMUST00000200321 985 ntBASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Gm44100-201ENSMUST00000204329 436 ntBASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Gm43931-201ENSMUST00000204817 2870 ntBASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Tead3-207ENSMUST00000219703 1320 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Tmub2-201ENSMUST00000036376 1939 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
Trim3Q9R1R2 Sptan1-204ENSMUST00000113717 7958 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
Trim3Q9R1R2 Dzip1l-201ENSMUST00000078367 3981 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.7
Trim3Q9R1R2 Gm26778-201ENSMUST00000181443 3805 ntTSL 5 BASIC10.71□□□□□ -0.7
Trim3Q9R1R2 Gm37969-201ENSMUST00000195777 3409 ntBASIC10.71□□□□□ -0.7
Trim3Q9R1R2 Slc25a42-202ENSMUST00000110127 3196 ntAPPRIS P1 TSL 5 BASIC10.71□□□□□ -0.7
Trim3Q9R1R2 Srgap3-202ENSMUST00000088373 8887 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Trim3Q9R1R2 Jade1-201ENSMUST00000026865 5481 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
Trim3Q9R1R2 Cyb5r3-202ENSMUST00000162178 2547 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
Trim3Q9R1R2 Tle3-202ENSMUST00000159050 2304 ntTSL 5 BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Entpd8-201ENSMUST00000044078 2299 ntAPPRIS P2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Npas2-201ENSMUST00000056815 4236 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Gm42427-201ENSMUST00000200473 5292 ntBASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Vrk1-201ENSMUST00000021539 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Msh5-201ENSMUST00000007250 2886 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Gm29771-201ENSMUST00000193142 1423 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Pla2g4b-201ENSMUST00000126150 2790 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Gm32036-201ENSMUST00000221484 2638 ntTSL 2 BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Sema4c-202ENSMUST00000191642 3892 ntAPPRIS P1 TSL 5 BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Gm11753-201ENSMUST00000151091 396 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Tbc1d22bos-201ENSMUST00000159875 826 ntTSL 3 BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Rpl31-202ENSMUST00000178079 487 ntAPPRIS P1 TSL 2 BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Gm8546-201ENSMUST00000178288 1264 ntBASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Gm28937-201ENSMUST00000185413 695 ntBASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Gm29400-201ENSMUST00000187208 695 ntBASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Gm28662-201ENSMUST00000188446 695 ntBASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Gm28251-201ENSMUST00000188835 695 ntBASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Gm37318-201ENSMUST00000194325 695 ntBASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Gm38017-201ENSMUST00000194768 695 ntBASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Gm37287-201ENSMUST00000195449 695 ntBASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Gm37793-201ENSMUST00000195548 695 ntBASIC10.7□□□□□ -0.7
Trim3Q9R1R2 1700016D08Rik-202ENSMUST00000195807 368 ntBASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Gm5714-201ENSMUST00000197343 566 ntBASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Lect2-202ENSMUST00000225183 823 ntBASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Ginm1-202ENSMUST00000065124 300 ntBASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Gm5537-201ENSMUST00000091117 1252 ntBASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Tagln3-201ENSMUST00000096057 1240 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Limk2-201ENSMUST00000101638 3514 ntAPPRIS P4 TSL 1 (best) BASIC10.7□□□□□ -0.7
Trim3Q9R1R2 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 70.4 ms