Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Scnn1g-201ENSMUST00000000221 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Scn11aQ9R053 Lsm3-201ENSMUST00000040607 743 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Scn11aQ9R053 H2-Aa-201ENSMUST00000040655 1132 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Scn11aQ9R053 Dcpp2-201ENSMUST00000088598 611 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Scn11aQ9R053 AC022682.1-201ENSMUST00000224624 2023 ntBASIC13.27□□□□□ -0.28
Scn11aQ9R053 Grk4-202ENSMUST00000074651 3234 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Scn11aQ9R053 B4galnt2-201ENSMUST00000038343 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Scn11aQ9R053 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Scn11aQ9R053 Pou3f4-201ENSMUST00000078229 2928 ntAPPRIS P1 BASIC13.27□□□□□ -0.28
Scn11aQ9R053 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Scn11aQ9R053 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
Scn11aQ9R053 Gm15965-201ENSMUST00000123318 1428 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Scn11aQ9R053 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Scn11aQ9R053 Glis2-201ENSMUST00000014447 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Scn11aQ9R053 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
Scn11aQ9R053 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Scn11aQ9R053 Dab2-203ENSMUST00000110663 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Scn11aQ9R053 Mtmr2-201ENSMUST00000034396 3788 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Scn11aQ9R053 4930430F08Rik-201ENSMUST00000054471 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Scn11aQ9R053 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Scn11aQ9R053 Lurap1-201ENSMUST00000030469 5742 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Scn11aQ9R053 Gm12912-201ENSMUST00000121596 1381 ntBASIC13.27□□□□□ -0.29
Scn11aQ9R053 Trav12-3-201ENSMUST00000103657 442 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Scn11aQ9R053 Nifk-202ENSMUST00000112688 849 ntTSL 5 BASIC13.27□□□□□ -0.29
Scn11aQ9R053 Gm11919-201ENSMUST00000117609 721 ntBASIC13.27□□□□□ -0.29
Scn11aQ9R053 0610037L13Rik-206ENSMUST00000120473 835 ntTSL 2 BASIC13.27□□□□□ -0.29
Scn11aQ9R053 Gm15136-201ENSMUST00000120552 533 ntBASIC13.27□□□□□ -0.29
Scn11aQ9R053 C330021F23Rik-204ENSMUST00000151633 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Scn11aQ9R053 Adh6-ps1-202ENSMUST00000196293 754 ntBASIC13.27□□□□□ -0.29
Scn11aQ9R053 Gm8234-201ENSMUST00000198523 1107 ntBASIC13.27□□□□□ -0.29
Scn11aQ9R053 AC156790.2-201ENSMUST00000227115 568 ntBASIC13.27□□□□□ -0.29
Scn11aQ9R053 BX649293.1-201ENSMUST00000227437 631 ntBASIC13.27□□□□□ -0.29
Scn11aQ9R053 Iah1-201ENSMUST00000076813 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Scn11aQ9R053 C330021F23Rik-201ENSMUST00000086479 1111 ntAPPRIS P2 TSL 5 BASIC13.27□□□□□ -0.29
Scn11aQ9R053 Krtap3-3-201ENSMUST00000092700 736 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Scn11aQ9R053 Nxpe3-201ENSMUST00000099705 6430 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Scn11aQ9R053 AC149588.2-201ENSMUST00000228182 1859 ntBASIC13.27□□□□□ -0.29
Scn11aQ9R053 Mcf2l-207ENSMUST00000110876 5253 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Scn11aQ9R053 Supt3-201ENSMUST00000050630 1508 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Scn11aQ9R053 Pkn1-208ENSMUST00000144258 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Scn11aQ9R053 Os9-202ENSMUST00000164259 2627 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Fuk-201ENSMUST00000041382 3838 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Gm37160-201ENSMUST00000193081 1689 ntBASIC13.26□□□□□ -0.29
Scn11aQ9R053 Mxd1-201ENSMUST00000001184 4666 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Cct3-208ENSMUST00000168062 1943 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Cxcl11-201ENSMUST00000077820 1581 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Thoc6-202ENSMUST00000095579 1450 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Grin2b-205ENSMUST00000152012 2461 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Kcnn1-204ENSMUST00000212086 2964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Gm26818-201ENSMUST00000181367 1360 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Gm37058-201ENSMUST00000193393 1644 ntBASIC13.26□□□□□ -0.29
Scn11aQ9R053 C2-201ENSMUST00000025230 2641 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Ajuba-201ENSMUST00000054487 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Ankrd34b-201ENSMUST00000061594 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Atg4d-201ENSMUST00000065005 5951 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Fas-202ENSMUST00000112472 555 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 9230111E07Rik-201ENSMUST00000124850 811 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Gm37988-201ENSMUST00000155020 825 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Gm24346-201ENSMUST00000158712 194 ntBASIC13.26□□□□□ -0.29
Scn11aQ9R053 Has2os-202ENSMUST00000163314 633 ntTSL 3 BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Pax5-209ENSMUST00000165417 1056 ntTSL 5 BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Uba52-ps-201ENSMUST00000183770 379 ntBASIC13.26□□□□□ -0.29
Scn11aQ9R053 Gm12216-207ENSMUST00000220191 1073 ntAPPRIS P5 TSL 5 BASIC13.26□□□□□ -0.29
Scn11aQ9R053 CT025679.1-201ENSMUST00000227106 449 ntBASIC13.26□□□□□ -0.29
Scn11aQ9R053 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Fggy-201ENSMUST00000043335 1910 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Slc20a1-202ENSMUST00000110315 3219 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Ccr6-205ENSMUST00000177568 1334 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Ptprr-206ENSMUST00000148731 2511 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Kcnt1-204ENSMUST00000114176 4166 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 C530044C16Rik-201ENSMUST00000204275 1624 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Wfdc8-202ENSMUST00000109338 1794 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Timp4-201ENSMUST00000032462 5496 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
Scn11aQ9R053 Mrc2-202ENSMUST00000100335 5795 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Scn11aQ9R053 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Scn11aQ9R053 Slc6a12-209ENSMUST00000171008 1674 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Scn11aQ9R053 Ccdc191-201ENSMUST00000122014 1822 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
Scn11aQ9R053 Ltc4s-201ENSMUST00000101265 480 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Scn11aQ9R053 Nup188-202ENSMUST00000113634 534 ntTSL 2 BASIC13.25□□□□□ -0.29
Scn11aQ9R053 Ifitm7-201ENSMUST00000117803 853 ntAPPRIS P5 TSL 1 (best) BASIC13.25□□□□□ -0.29
Scn11aQ9R053 Gm1826-201ENSMUST00000118646 1162 ntBASIC13.25□□□□□ -0.29
Scn11aQ9R053 Gm12136-201ENSMUST00000120460 1209 ntBASIC13.25□□□□□ -0.29
Scn11aQ9R053 Gm8876-201ENSMUST00000120768 1122 ntBASIC13.25□□□□□ -0.29
Scn11aQ9R053 Vmn1r-ps104-201ENSMUST00000120960 771 ntBASIC13.25□□□□□ -0.29
Scn11aQ9R053 Gm13783-201ENSMUST00000131634 732 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Scn11aQ9R053 Gm14798-201ENSMUST00000139695 1189 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Scn11aQ9R053 Gm20703-201ENSMUST00000175668 385 ntTSL 2 BASIC13.25□□□□□ -0.29
Scn11aQ9R053 4930573C15Rik-201ENSMUST00000197707 777 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 67.8 ms