Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Gm44086-201ENSMUST00000203251 2349 ntBASIC11.78□□□□□ -0.52
Sox9Q04887 Fip1l1-201ENSMUST00000080164 4673 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Matn2-203ENSMUST00000226766 3252 ntBASIC11.78□□□□□ -0.52
Sox9Q04887 Plcb1-202ENSMUST00000110116 7003 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Acnat2-202ENSMUST00000107698 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Spg20-202ENSMUST00000107971 3567 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Trpc7-207ENSMUST00000173817 2406 ntTSL 5 BASIC11.78□□□□□ -0.52
Sox9Q04887 Trpc7-208ENSMUST00000174457 2424 ntTSL 5 BASIC11.78□□□□□ -0.52
Sox9Q04887 Dab2ip-204ENSMUST00000112983 6051 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Evi2a-201ENSMUST00000103236 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Gm29684-201ENSMUST00000220248 1982 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Rrnad1-201ENSMUST00000005016 2492 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 CT025624.1-201ENSMUST00000224007 2700 ntBASIC11.78□□□□□ -0.52
Sox9Q04887 Lrrc20-201ENSMUST00000049242 3216 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Gm37014-201ENSMUST00000194723 2253 ntBASIC11.78□□□□□ -0.52
Sox9Q04887 B2m-201ENSMUST00000102476 860 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Mapk8-202ENSMUST00000111942 927 ntTSL 5 BASIC11.78□□□□□ -0.52
Sox9Q04887 Gm13284-201ENSMUST00000121020 547 ntBASIC11.78□□□□□ -0.52
Sox9Q04887 Junos-202ENSMUST00000125438 559 ntTSL 2 BASIC11.78□□□□□ -0.52
Sox9Q04887 Gm16228-201ENSMUST00000162286 809 ntBASIC11.78□□□□□ -0.52
Sox9Q04887 Erg-208ENSMUST00000176345 1222 ntTSL 5 BASIC11.78□□□□□ -0.52
Sox9Q04887 Gm28342-201ENSMUST00000190308 589 ntTSL 3 BASIC11.78□□□□□ -0.52
Sox9Q04887 9530034A14Rik-201ENSMUST00000197919 1083 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Gm36176-201ENSMUST00000218749 501 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
Sox9Q04887 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC11.78□□□□□ -0.52
Sox9Q04887 Prr19-201ENSMUST00000080288 1240 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Mcm9-204ENSMUST00000219838 4132 ntTSL 5 BASIC11.78□□□□□ -0.52
Sox9Q04887 Phyhipl-201ENSMUST00000046513 2877 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Ticrr-201ENSMUST00000035977 7199 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 Gm13615-201ENSMUST00000120242 1612 ntBASIC11.78□□□□□ -0.52
Sox9Q04887 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC11.78□□□□□ -0.52
Sox9Q04887 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Sox9Q04887 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC11.78□□□□□ -0.52
Sox9Q04887 Sema4a-215ENSMUST00000169222 3084 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
Sox9Q04887 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC11.78□□□□□ -0.52
Sox9Q04887 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC11.78□□□□□ -0.52
Sox9Q04887 Plxna4os1-201ENSMUST00000150314 1977 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
Sox9Q04887 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Sox9Q04887 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
Sox9Q04887 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC11.77□□□□□ -0.52
Sox9Q04887 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Sox9Q04887 Arih1-202ENSMUST00000165322 1431 ntTSL 5 BASIC11.77□□□□□ -0.52
Sox9Q04887 Gm42499-201ENSMUST00000196193 1412 ntBASIC11.77□□□□□ -0.52
Sox9Q04887 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
Sox9Q04887 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC11.77□□□□□ -0.52
Sox9Q04887 Hps3-201ENSMUST00000012580 4016 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Sox9Q04887 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Sox9Q04887 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Sox9Q04887 Ddr1-204ENSMUST00000119825 3769 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
Sox9Q04887 Gatad2a-201ENSMUST00000065169 3812 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
Sox9Q04887 Limd2-201ENSMUST00000045923 2950 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Sox9Q04887 Esr1-204ENSMUST00000105590 6339 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
Sox9Q04887 Asap1-217ENSMUST00000177371 6164 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
Sox9Q04887 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Sox9Q04887 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Sox9Q04887 Ank3-201ENSMUST00000047061 2517 ntTSL 5 BASIC11.77□□□□□ -0.53
Sox9Q04887 Trbv31-201ENSMUST00000103300 334 ntAPPRIS ALT2 BASIC11.77□□□□□ -0.53
Sox9Q04887 Gm24933-201ENSMUST00000103762 110 ntBASIC11.77□□□□□ -0.53
Sox9Q04887 Gm23252-201ENSMUST00000103776 110 ntBASIC11.77□□□□□ -0.53
Sox9Q04887 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
Sox9Q04887 Pdzk1ip1-202ENSMUST00000106548 887 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Sox9Q04887 Gm16217-201ENSMUST00000124182 616 ntTSL 3 BASIC11.77□□□□□ -0.53
Sox9Q04887 Gm15912-201ENSMUST00000128914 578 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Sox9Q04887 Gm13412-201ENSMUST00000150621 677 ntTSL 3 BASIC11.77□□□□□ -0.53
Sox9Q04887 Mocs2-201ENSMUST00000015680 1152 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Sox9Q04887 Gm24992-201ENSMUST00000157412 130 ntBASIC11.77□□□□□ -0.53
Sox9Q04887 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Sox9Q04887 Rpl19-201ENSMUST00000017548 751 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
Sox9Q04887 Gm21778-201ENSMUST00000178779 471 ntBASIC11.77□□□□□ -0.53
Sox9Q04887 Gm5294-201ENSMUST00000179205 651 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
Sox9Q04887 Gm26443-201ENSMUST00000179610 110 ntBASIC11.77□□□□□ -0.53
Sox9Q04887 Olfr1432-201ENSMUST00000180978 930 ntAPPRIS ALT2 BASIC11.77□□□□□ -0.53
Sox9Q04887 Gm29431-201ENSMUST00000189848 449 ntTSL 5 BASIC11.77□□□□□ -0.53
Sox9Q04887 BC028471-201ENSMUST00000200937 520 ntTSL 2 BASIC11.77□□□□□ -0.53
Sox9Q04887 Gm43997-201ENSMUST00000203986 1005 ntBASIC11.77□□□□□ -0.53
Sox9Q04887 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC11.77□□□□□ -0.53
Sox9Q04887 Gm29918-201ENSMUST00000205635 138 ntTSL 5 BASIC11.77□□□□□ -0.53
Sox9Q04887 AC165249.1-202ENSMUST00000217990 734 ntTSL 3 BASIC11.77□□□□□ -0.53
Sox9Q04887 AC155709.2-201ENSMUST00000219360 678 ntTSL 3 BASIC11.77□□□□□ -0.53
Sox9Q04887 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC11.77□□□□□ -0.53
Sox9Q04887 Id2-203ENSMUST00000222667 958 ntBASIC11.77□□□□□ -0.53
Sox9Q04887 AC154407.1-201ENSMUST00000226777 526 ntBASIC11.77□□□□□ -0.53
Sox9Q04887 AC122035.1-201ENSMUST00000227576 1016 ntBASIC11.77□□□□□ -0.53
Sox9Q04887 Crygd-201ENSMUST00000045028 613 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Sox9Q04887 Ccdc30-203ENSMUST00000084307 989 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Sox9Q04887 Rpl19-202ENSMUST00000092425 737 ntAPPRIS ALT1 TSL 3 BASIC11.77□□□□□ -0.53
Sox9Q04887 Gm9507-201ENSMUST00000095491 877 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Sox9Q04887 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Sox9Q04887 Snx6-201ENSMUST00000005798 1928 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Sox9Q04887 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Sox9Q04887 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Sox9Q04887 Pou3f4-201ENSMUST00000078229 2928 ntAPPRIS P1 BASIC11.77□□□□□ -0.53
Sox9Q04887 Dedd-202ENSMUST00000097467 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 81.4 ms