Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Usp40Q8BWR4 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
Usp40Q8BWR4 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
Usp40Q8BWR4 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC28.2■■■□□ 2.1
Usp40Q8BWR4 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC28.2■■■□□ 2.1
Usp40Q8BWR4 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
Usp40Q8BWR4 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
Usp40Q8BWR4 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Usp40Q8BWR4 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC28.19■■■□□ 2.1
Usp40Q8BWR4 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC28.19■■■□□ 2.1
Usp40Q8BWR4 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC28.19■■■□□ 2.1
Usp40Q8BWR4 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC28.19■■■□□ 2.1
Usp40Q8BWR4 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
Usp40Q8BWR4 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Usp40Q8BWR4 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC28.18■■■□□ 2.1
Usp40Q8BWR4 Gm10209-201ENSMUST00000203397 1607 ntBASIC28.17■■■□□ 2.1
Usp40Q8BWR4 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
Usp40Q8BWR4 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC28.17■■■□□ 2.1
Usp40Q8BWR4 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
Usp40Q8BWR4 Snapin-203ENSMUST00000149884 1928 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Usp40Q8BWR4 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
Usp40Q8BWR4 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC28.16■■■□□ 2.1
Usp40Q8BWR4 Cdc34b-202ENSMUST00000188741 1252 ntBASIC28.16■■■□□ 2.1
Usp40Q8BWR4 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC28.16■■■□□ 2.1
Usp40Q8BWR4 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
Usp40Q8BWR4 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC28.16■■■□□ 2.1
Usp40Q8BWR4 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
Usp40Q8BWR4 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC28.16■■■□□ 2.1
Usp40Q8BWR4 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
Usp40Q8BWR4 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
Usp40Q8BWR4 Gm27045-201ENSMUST00000182145 1402 ntBASIC28.15■■■□□ 2.1
Usp40Q8BWR4 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC28.15■■■□□ 2.1
Usp40Q8BWR4 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Usp40Q8BWR4 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC28.14■■■□□ 2.1
Usp40Q8BWR4 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
Usp40Q8BWR4 Gm26833-201ENSMUST00000180899 440 ntBASIC28.14■■■□□ 2.1
Usp40Q8BWR4 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC28.14■■■□□ 2.1
Usp40Q8BWR4 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
Usp40Q8BWR4 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC28.14■■■□□ 2.09
Usp40Q8BWR4 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
Usp40Q8BWR4 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC28.13■■■□□ 2.09
Usp40Q8BWR4 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Usp40Q8BWR4 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
Usp40Q8BWR4 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Usp40Q8BWR4 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Usp40Q8BWR4 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
Usp40Q8BWR4 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC28.13■■■□□ 2.09
Usp40Q8BWR4 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC28.13■■■□□ 2.09
Usp40Q8BWR4 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
Usp40Q8BWR4 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
Usp40Q8BWR4 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Usp40Q8BWR4 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Usp40Q8BWR4 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC28.12■■■□□ 2.09
Usp40Q8BWR4 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Usp40Q8BWR4 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
Usp40Q8BWR4 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
Usp40Q8BWR4 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
Usp40Q8BWR4 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
Usp40Q8BWR4 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
Usp40Q8BWR4 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC28.11■■■□□ 2.09
Usp40Q8BWR4 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC28.11■■■□□ 2.09
Usp40Q8BWR4 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
Usp40Q8BWR4 Gm20431-201ENSMUST00000125544 2367 ntAPPRIS P1 TSL 5 BASIC28.11■■■□□ 2.09
Usp40Q8BWR4 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC28.11■■■□□ 2.09
Usp40Q8BWR4 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
Usp40Q8BWR4 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
Usp40Q8BWR4 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Usp40Q8BWR4 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC28.1■■■□□ 2.09
Usp40Q8BWR4 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC28.1■■■□□ 2.09
Usp40Q8BWR4 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC28.1■■■□□ 2.09
Usp40Q8BWR4 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Usp40Q8BWR4 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
Usp40Q8BWR4 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC28.1■■■□□ 2.09
Usp40Q8BWR4 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Usp40Q8BWR4 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
Usp40Q8BWR4 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
Usp40Q8BWR4 Fbxl21-202ENSMUST00000121095 798 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
Usp40Q8BWR4 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC28.09■■■□□ 2.09
Usp40Q8BWR4 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Usp40Q8BWR4 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC28.08■■■□□ 2.09
Usp40Q8BWR4 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC28.08■■■□□ 2.09
Usp40Q8BWR4 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Usp40Q8BWR4 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Usp40Q8BWR4 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC28.07■■■□□ 2.08
Usp40Q8BWR4 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Usp40Q8BWR4 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC28.07■■■□□ 2.08
Usp40Q8BWR4 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Usp40Q8BWR4 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Usp40Q8BWR4 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC28.07■■■□□ 2.08
Usp40Q8BWR4 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Usp40Q8BWR4 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Usp40Q8BWR4 Gm5874-201ENSMUST00000096101 508 ntBASIC28.06■■■□□ 2.08
Usp40Q8BWR4 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC28.06■■■□□ 2.08
Usp40Q8BWR4 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC28.06■■■□□ 2.08
Usp40Q8BWR4 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC28.05■■■□□ 2.08
Usp40Q8BWR4 Smad6-203ENSMUST00000179458 273 ntBASIC28.05■■■□□ 2.08
Usp40Q8BWR4 Gm43060-201ENSMUST00000200621 289 ntBASIC28.05■■■□□ 2.08
Usp40Q8BWR4 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC28.05■■■□□ 2.08
Usp40Q8BWR4 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC28.04■■■□□ 2.08
Usp40Q8BWR4 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.08
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms