Protein–RNA interactions for Protein: Q6P7W2

Shkbp1, SH3KBP1-binding protein 1, mousemouse

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shkbp1Q6P7W2 Gm44949-201ENSMUST00000206423 1450 ntBASIC21.37■■□□□ 1.01
Shkbp1Q6P7W2 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
Shkbp1Q6P7W2 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Shkbp1Q6P7W2 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Shkbp1Q6P7W2 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Shkbp1Q6P7W2 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Shkbp1Q6P7W2 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
Shkbp1Q6P7W2 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Shkbp1Q6P7W2 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Shkbp1Q6P7W2 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Shkbp1Q6P7W2 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Shkbp1Q6P7W2 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Shkbp1Q6P7W2 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Shkbp1Q6P7W2 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Shkbp1Q6P7W2 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC21.35■■□□□ 1.01
Shkbp1Q6P7W2 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Shkbp1Q6P7W2 Apoe-206ENSMUST00000174064 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Shkbp1Q6P7W2 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Shkbp1Q6P7W2 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Shkbp1Q6P7W2 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Shkbp1Q6P7W2 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Shkbp1Q6P7W2 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC21.34■■□□□ 1.01
Shkbp1Q6P7W2 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Shkbp1Q6P7W2 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Shkbp1Q6P7W2 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Shkbp1Q6P7W2 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Shkbp1Q6P7W2 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Shkbp1Q6P7W2 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC21.33■■□□□ 1.01
Shkbp1Q6P7W2 Gm43060-201ENSMUST00000200621 289 ntBASIC21.33■■□□□ 1.01
Shkbp1Q6P7W2 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Shkbp1Q6P7W2 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
Shkbp1Q6P7W2 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC21.32■■□□□ 1
Shkbp1Q6P7W2 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Shkbp1Q6P7W2 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC21.32■■□□□ 1
Shkbp1Q6P7W2 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Shkbp1Q6P7W2 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Shkbp1Q6P7W2 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC21.32■■□□□ 1
Shkbp1Q6P7W2 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC21.32■■□□□ 1
Shkbp1Q6P7W2 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC21.32■■□□□ 1
Shkbp1Q6P7W2 Gm40848-201ENSMUST00000221998 324 ntBASIC21.32■■□□□ 1
Shkbp1Q6P7W2 Krtap5-3-201ENSMUST00000084414 1074 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
Shkbp1Q6P7W2 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Shkbp1Q6P7W2 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC21.32■■□□□ 1
Shkbp1Q6P7W2 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
Shkbp1Q6P7W2 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Shkbp1Q6P7W2 Gm27045-201ENSMUST00000182145 1402 ntBASIC21.31■■□□□ 1
Shkbp1Q6P7W2 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Shkbp1Q6P7W2 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Shkbp1Q6P7W2 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Shkbp1Q6P7W2 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Shkbp1Q6P7W2 Mrgbp-206ENSMUST00000169630 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Shkbp1Q6P7W2 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Shkbp1Q6P7W2 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC21.3■■□□□ 1
Shkbp1Q6P7W2 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC21.3■■□□□ 1
Shkbp1Q6P7W2 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Shkbp1Q6P7W2 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Shkbp1Q6P7W2 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Shkbp1Q6P7W2 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Shkbp1Q6P7W2 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Shkbp1Q6P7W2 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Shkbp1Q6P7W2 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Shkbp1Q6P7W2 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Shkbp1Q6P7W2 Smad6-203ENSMUST00000179458 273 ntBASIC21.29■■□□□ 1
Shkbp1Q6P7W2 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC21.29■■□□□ 1
Shkbp1Q6P7W2 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Shkbp1Q6P7W2 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC21.29■■□□□ 1
Shkbp1Q6P7W2 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.28■■□□□ 1
Shkbp1Q6P7W2 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC21.28■■□□□ 1
Shkbp1Q6P7W2 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC21.28■■□□□ 1
Shkbp1Q6P7W2 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC21.28■■□□□ 1
Shkbp1Q6P7W2 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Shkbp1Q6P7W2 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Shkbp1Q6P7W2 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Shkbp1Q6P7W2 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Shkbp1Q6P7W2 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Shkbp1Q6P7W2 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Shkbp1Q6P7W2 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Shkbp1Q6P7W2 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Shkbp1Q6P7W2 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Shkbp1Q6P7W2 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Shkbp1Q6P7W2 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Shkbp1Q6P7W2 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC21.26■□□□□ 0.99
Shkbp1Q6P7W2 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC21.26■□□□□ 0.99
Shkbp1Q6P7W2 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Shkbp1Q6P7W2 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC21.26■□□□□ 0.99
Shkbp1Q6P7W2 Akt1s1-204ENSMUST00000107885 1812 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Shkbp1Q6P7W2 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Shkbp1Q6P7W2 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC21.26■□□□□ 0.99
Shkbp1Q6P7W2 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC21.26■□□□□ 0.99
Shkbp1Q6P7W2 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Shkbp1Q6P7W2 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC21.25■□□□□ 0.99
Shkbp1Q6P7W2 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Shkbp1Q6P7W2 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC21.25■□□□□ 0.99
Shkbp1Q6P7W2 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Shkbp1Q6P7W2 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Shkbp1Q6P7W2 Slc18a3-201ENSMUST00000191501 2413 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Shkbp1Q6P7W2 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Shkbp1Q6P7W2 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Shkbp1Q6P7W2 Gm26766-202ENSMUST00000227544 2347 ntBASIC21.24■□□□□ 0.99
Shkbp1Q6P7W2 AC165080.2-201ENSMUST00000217491 1530 ntBASIC21.24■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 9.6 ms