Protein–RNA interactions for Protein: P53784

Sox3, Transcription factor SOX-3, mousemouse

Predictions only

Length 375 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox3P53784 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Sox3P53784 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Sox3P53784 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Sox3P53784 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sox3P53784 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sox3P53784 Rnf166-201ENSMUST00000014614 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sox3P53784 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC19.35■□□□□ 0.69
Sox3P53784 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Sox3P53784 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
Sox3P53784 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Sox3P53784 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Sox3P53784 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sox3P53784 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Sox3P53784 Apaf1-205ENSMUST00000160788 1596 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Sox3P53784 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sox3P53784 F930015N05Rik-201ENSMUST00000177999 1498 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Sox3P53784 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sox3P53784 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sox3P53784 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Sox3P53784 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Sox3P53784 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Sox3P53784 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Sox3P53784 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
Sox3P53784 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
Sox3P53784 Arl10-201ENSMUST00000026988 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Sox3P53784 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Sox3P53784 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Sox3P53784 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sox3P53784 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sox3P53784 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sox3P53784 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC19.32■□□□□ 0.68
Sox3P53784 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sox3P53784 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sox3P53784 Fbxw2-204ENSMUST00000113077 1670 ntTSL 5 BASIC19.32■□□□□ 0.68
Sox3P53784 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sox3P53784 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sox3P53784 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Sox3P53784 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
Sox3P53784 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sox3P53784 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Sox3P53784 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sox3P53784 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC19.31■□□□□ 0.68
Sox3P53784 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sox3P53784 Gm9833-201ENSMUST00000061419 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sox3P53784 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Sox3P53784 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Sox3P53784 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Sox3P53784 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sox3P53784 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
Sox3P53784 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sox3P53784 Whrn-208ENSMUST00000119294 2632 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Sox3P53784 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Sox3P53784 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
Sox3P53784 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox3P53784 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Sox3P53784 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox3P53784 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC19.3■□□□□ 0.68
Sox3P53784 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox3P53784 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox3P53784 Gm27011-201ENSMUST00000182352 972 ntBASIC19.3■□□□□ 0.68
Sox3P53784 Mir7075-201ENSMUST00000184187 82 ntBASIC19.3■□□□□ 0.68
Sox3P53784 Gm43137-201ENSMUST00000198052 594 ntBASIC19.3■□□□□ 0.68
Sox3P53784 Rtn4rl2-201ENSMUST00000054514 1263 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox3P53784 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox3P53784 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Sox3P53784 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox3P53784 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox3P53784 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Sox3P53784 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox3P53784 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox3P53784 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox3P53784 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Sox3P53784 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Sox3P53784 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox3P53784 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Sox3P53784 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox3P53784 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox3P53784 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox3P53784 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox3P53784 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Sox3P53784 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox3P53784 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Sox3P53784 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Sox3P53784 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC19.28■□□□□ 0.68
Sox3P53784 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC19.28■□□□□ 0.68
Sox3P53784 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sox3P53784 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Sox3P53784 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Sox3P53784 Gm42418-201ENSMUST00000182010 1831 ntBASIC19.28■□□□□ 0.68
Sox3P53784 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sox3P53784 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Sox3P53784 Gm10620-201ENSMUST00000098379 1332 ntBASIC19.27■□□□□ 0.68
Sox3P53784 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Sox3P53784 Dlk2-204ENSMUST00000170271 1783 ntTSL 5 BASIC19.27■□□□□ 0.68
Sox3P53784 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sox3P53784 BC022687-201ENSMUST00000037014 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Sox3P53784 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Sox3P53784 Gm27027-201ENSMUST00000183110 547 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
Sox3P53784 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Sox3P53784 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms