Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Msx1P13297 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Msx1P13297 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC19.22■□□□□ 0.67
Msx1P13297 Ppp1r18os-201ENSMUST00000145804 784 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Msx1P13297 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Msx1P13297 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Msx1P13297 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC19.22■□□□□ 0.67
Msx1P13297 Gm44949-201ENSMUST00000206423 1450 ntBASIC19.22■□□□□ 0.67
Msx1P13297 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msx1P13297 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msx1P13297 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
Msx1P13297 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msx1P13297 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msx1P13297 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msx1P13297 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msx1P13297 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msx1P13297 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msx1P13297 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC19.21■□□□□ 0.67
Msx1P13297 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Msx1P13297 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Msx1P13297 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Msx1P13297 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Msx1P13297 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msx1P13297 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msx1P13297 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Msx1P13297 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC19.2■□□□□ 0.66
Msx1P13297 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msx1P13297 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msx1P13297 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
Msx1P13297 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msx1P13297 Gm21168-201ENSMUST00000199646 1096 ntBASIC19.2■□□□□ 0.66
Msx1P13297 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msx1P13297 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Msx1P13297 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msx1P13297 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Msx1P13297 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Msx1P13297 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msx1P13297 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msx1P13297 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Msx1P13297 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msx1P13297 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
Msx1P13297 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msx1P13297 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Msx1P13297 AC124392.1-201ENSMUST00000225172 5324 ntBASIC19.19■□□□□ 0.66
Msx1P13297 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Msx1P13297 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Msx1P13297 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Msx1P13297 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Msx1P13297 Gm5913-201ENSMUST00000119397 1399 ntBASIC19.19■□□□□ 0.66
Msx1P13297 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC19.18■□□□□ 0.66
Msx1P13297 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msx1P13297 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC19.18■□□□□ 0.66
Msx1P13297 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC19.18■□□□□ 0.66
Msx1P13297 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Msx1P13297 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Msx1P13297 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msx1P13297 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msx1P13297 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msx1P13297 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Msx1P13297 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msx1P13297 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC19.17■□□□□ 0.66
Msx1P13297 AC164629.5-201ENSMUST00000220387 632 ntBASIC19.17■□□□□ 0.66
Msx1P13297 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msx1P13297 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msx1P13297 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Msx1P13297 Kdm3b-204ENSMUST00000224715 2032 ntBASIC19.17■□□□□ 0.66
Msx1P13297 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Msx1P13297 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Msx1P13297 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Msx1P13297 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC19.16■□□□□ 0.66
Msx1P13297 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Msx1P13297 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Msx1P13297 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Msx1P13297 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Msx1P13297 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
Msx1P13297 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Msx1P13297 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Msx1P13297 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC19.15■□□□□ 0.66
Msx1P13297 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
Msx1P13297 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC19.15■□□□□ 0.66
Msx1P13297 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC19.15■□□□□ 0.66
Msx1P13297 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC19.15■□□□□ 0.66
Msx1P13297 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Msx1P13297 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Msx1P13297 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Msx1P13297 Rbfox3-206ENSMUST00000120061 2150 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Msx1P13297 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
Msx1P13297 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Msx1P13297 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Msx1P13297 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Msx1P13297 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Msx1P13297 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Msx1P13297 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Msx1P13297 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
Msx1P13297 Gm43137-201ENSMUST00000198052 594 ntBASIC19.14■□□□□ 0.65
Msx1P13297 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Msx1P13297 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Msx1P13297 Gm6277-202ENSMUST00000224036 2779 ntBASIC19.14■□□□□ 0.65
Msx1P13297 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Msx1P13297 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 49.9 ms