Protein–RNA interactions for Protein: O55017

Cacna1b, Voltage-dependent N-type calcium channel subunit alpha-1B, mousemouse

Predictions only

Length 2,327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1bO55017 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cacna1bO55017 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Cacna1bO55017 Dyrk1b-201ENSMUST00000085901 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cacna1bO55017 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cacna1bO55017 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC19.72■□□□□ 0.75
Cacna1bO55017 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
Cacna1bO55017 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Cacna1bO55017 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
Cacna1bO55017 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cacna1bO55017 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Cacna1bO55017 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cacna1bO55017 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cacna1bO55017 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC19.71■□□□□ 0.75
Cacna1bO55017 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cacna1bO55017 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC19.7■□□□□ 0.74
Cacna1bO55017 Gm42778-201ENSMUST00000199644 553 ntBASIC19.7■□□□□ 0.74
Cacna1bO55017 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Cacna1bO55017 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cacna1bO55017 Dact1-202ENSMUST00000150639 2448 ntAPPRIS P1 TSL 3 BASIC19.7■□□□□ 0.74
Cacna1bO55017 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Cacna1bO55017 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC19.7■□□□□ 0.74
Cacna1bO55017 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cacna1bO55017 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cacna1bO55017 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Cacna1bO55017 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Cacna1bO55017 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cacna1bO55017 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC19.69■□□□□ 0.74
Cacna1bO55017 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cacna1bO55017 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC19.69■□□□□ 0.74
Cacna1bO55017 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Cacna1bO55017 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cacna1bO55017 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cacna1bO55017 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC19.69■□□□□ 0.74
Cacna1bO55017 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cacna1bO55017 AC166356.1-201ENSMUST00000228236 1426 ntBASIC19.69■□□□□ 0.74
Cacna1bO55017 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cacna1bO55017 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cacna1bO55017 Krt10-201ENSMUST00000103131 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cacna1bO55017 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
Cacna1bO55017 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC19.68■□□□□ 0.74
Cacna1bO55017 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cacna1bO55017 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC19.68■□□□□ 0.74
Cacna1bO55017 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Cacna1bO55017 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Cacna1bO55017 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Cacna1bO55017 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cacna1bO55017 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
Cacna1bO55017 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Cacna1bO55017 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cacna1bO55017 Ttc14-206ENSMUST00000196975 1711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cacna1bO55017 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Cacna1bO55017 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cacna1bO55017 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cacna1bO55017 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Cacna1bO55017 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Cacna1bO55017 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cacna1bO55017 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cacna1bO55017 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC19.66■□□□□ 0.74
Cacna1bO55017 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cacna1bO55017 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cacna1bO55017 Gm10602-201ENSMUST00000098239 609 ntBASIC19.66■□□□□ 0.74
Cacna1bO55017 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cacna1bO55017 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC19.65■□□□□ 0.74
Cacna1bO55017 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC19.65■□□□□ 0.74
Cacna1bO55017 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Cacna1bO55017 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cacna1bO55017 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC19.65■□□□□ 0.74
Cacna1bO55017 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cacna1bO55017 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Cacna1bO55017 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cacna1bO55017 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cacna1bO55017 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cacna1bO55017 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cacna1bO55017 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cacna1bO55017 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Cacna1bO55017 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC19.64■□□□□ 0.74
Cacna1bO55017 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC19.64■□□□□ 0.74
Cacna1bO55017 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cacna1bO55017 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cacna1bO55017 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cacna1bO55017 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Cacna1bO55017 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cacna1bO55017 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC19.63■□□□□ 0.73
Cacna1bO55017 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC19.63■□□□□ 0.73
Cacna1bO55017 Nespas-201ENSMUST00000143738 1083 ntBASIC19.63■□□□□ 0.73
Cacna1bO55017 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Cacna1bO55017 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Cacna1bO55017 Gm27045-201ENSMUST00000182145 1402 ntBASIC19.63■□□□□ 0.73
Cacna1bO55017 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cacna1bO55017 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC19.62■□□□□ 0.73
Cacna1bO55017 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Cacna1bO55017 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Cacna1bO55017 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC19.62■□□□□ 0.73
Cacna1bO55017 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cacna1bO55017 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Cacna1bO55017 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cacna1bO55017 Ttc7b-201ENSMUST00000062957 3446 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cacna1bO55017 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cacna1bO55017 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Cacna1bO55017 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 379.1 ms