Protein–RNA interactions for Protein: O54788

Dffb, DNA fragmentation factor subunit beta, mousemouse

Known RBP Predictions only

Length 344 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DffbO54788 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC17.39■□□□□ 0.37
DffbO54788 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
DffbO54788 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
DffbO54788 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
DffbO54788 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
DffbO54788 Dda1-202ENSMUST00000124745 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
DffbO54788 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
DffbO54788 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DffbO54788 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DffbO54788 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
DffbO54788 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DffbO54788 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC17.38■□□□□ 0.37
DffbO54788 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC17.38■□□□□ 0.37
DffbO54788 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DffbO54788 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
DffbO54788 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
DffbO54788 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC17.37■□□□□ 0.37
DffbO54788 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DffbO54788 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DffbO54788 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
DffbO54788 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
DffbO54788 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DffbO54788 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
DffbO54788 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC17.37■□□□□ 0.37
DffbO54788 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
DffbO54788 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
DffbO54788 Golph3-202ENSMUST00000226517 2359 ntBASIC17.37■□□□□ 0.37
DffbO54788 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
DffbO54788 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DffbO54788 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DffbO54788 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
DffbO54788 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DffbO54788 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DffbO54788 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DffbO54788 Rell2-202ENSMUST00000091932 1995 ntTSL 2 BASIC17.36■□□□□ 0.37
DffbO54788 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DffbO54788 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DffbO54788 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DffbO54788 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DffbO54788 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
DffbO54788 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
DffbO54788 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DffbO54788 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
DffbO54788 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
DffbO54788 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DffbO54788 Gm5067-201ENSMUST00000170449 1009 ntBASIC17.35■□□□□ 0.37
DffbO54788 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DffbO54788 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
DffbO54788 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DffbO54788 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DffbO54788 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DffbO54788 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
DffbO54788 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DffbO54788 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
DffbO54788 Pdcd2-205ENSMUST00000154293 1924 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
DffbO54788 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
DffbO54788 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC17.35■□□□□ 0.37
DffbO54788 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
DffbO54788 Ksr1-202ENSMUST00000108264 2748 ntTSL 5 BASIC17.34■□□□□ 0.37
DffbO54788 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
DffbO54788 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC17.34■□□□□ 0.37
DffbO54788 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
DffbO54788 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
DffbO54788 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC17.34■□□□□ 0.37
DffbO54788 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
DffbO54788 D130020L05Rik-203ENSMUST00000221044 803 ntTSL 2 BASIC17.34■□□□□ 0.37
DffbO54788 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
DffbO54788 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
DffbO54788 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
DffbO54788 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
DffbO54788 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC17.34■□□□□ 0.37
DffbO54788 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
DffbO54788 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
DffbO54788 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
DffbO54788 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
DffbO54788 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
DffbO54788 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.37
DffbO54788 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
DffbO54788 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
DffbO54788 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
DffbO54788 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
DffbO54788 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC17.33■□□□□ 0.36
DffbO54788 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
DffbO54788 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
DffbO54788 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
DffbO54788 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
DffbO54788 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
DffbO54788 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
DffbO54788 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
DffbO54788 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
DffbO54788 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
DffbO54788 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DffbO54788 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
DffbO54788 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
DffbO54788 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC17.32■□□□□ 0.36
DffbO54788 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC17.32■□□□□ 0.36
DffbO54788 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
DffbO54788 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
DffbO54788 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
DffbO54788 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms