Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Chd3B1AR17 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Chd3B1AR17 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Chd3B1AR17 Spcs1-204ENSMUST00000226782 949 ntBASIC20.04■□□□□ 0.8
Chd3B1AR17 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Chd3B1AR17 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC20.03■□□□□ 0.8
Chd3B1AR17 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC20.03■□□□□ 0.8
Chd3B1AR17 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Chd3B1AR17 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Chd3B1AR17 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Chd3B1AR17 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Chd3B1AR17 Gm7160-202ENSMUST00000188519 1027 ntBASIC20.03■□□□□ 0.8
Chd3B1AR17 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Chd3B1AR17 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Chd3B1AR17 Wdr70-203ENSMUST00000227371 1130 ntBASIC20.02■□□□□ 0.8
Chd3B1AR17 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Chd3B1AR17 Gm5576-201ENSMUST00000075809 1236 ntBASIC20.02■□□□□ 0.8
Chd3B1AR17 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Chd3B1AR17 Gm12504-201ENSMUST00000120860 2231 ntBASIC20.02■□□□□ 0.79
Chd3B1AR17 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Chd3B1AR17 Pkig-204ENSMUST00000126182 762 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
Chd3B1AR17 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC20.01■□□□□ 0.79
Chd3B1AR17 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC20.01■□□□□ 0.79
Chd3B1AR17 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Chd3B1AR17 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC20.01■□□□□ 0.79
Chd3B1AR17 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Chd3B1AR17 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Chd3B1AR17 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Chd3B1AR17 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Chd3B1AR17 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Chd3B1AR17 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC20■□□□□ 0.79
Chd3B1AR17 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Chd3B1AR17 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
Chd3B1AR17 Gm43017-201ENSMUST00000198296 752 ntBASIC20■□□□□ 0.79
Chd3B1AR17 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Chd3B1AR17 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Chd3B1AR17 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Chd3B1AR17 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Chd3B1AR17 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Chd3B1AR17 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Chd3B1AR17 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Chd3B1AR17 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Chd3B1AR17 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC19.99■□□□□ 0.79
Chd3B1AR17 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Chd3B1AR17 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC19.99■□□□□ 0.79
Chd3B1AR17 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Chd3B1AR17 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC19.99■□□□□ 0.79
Chd3B1AR17 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Chd3B1AR17 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Chd3B1AR17 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Chd3B1AR17 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Chd3B1AR17 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Chd3B1AR17 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Chd3B1AR17 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
Chd3B1AR17 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Chd3B1AR17 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Chd3B1AR17 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Chd3B1AR17 Gm44949-201ENSMUST00000206423 1450 ntBASIC19.97■□□□□ 0.79
Chd3B1AR17 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Chd3B1AR17 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Chd3B1AR17 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC19.97■□□□□ 0.79
Chd3B1AR17 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Chd3B1AR17 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC19.97■□□□□ 0.79
Chd3B1AR17 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Chd3B1AR17 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Chd3B1AR17 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Chd3B1AR17 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Chd3B1AR17 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Chd3B1AR17 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC19.96■□□□□ 0.79
Chd3B1AR17 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Chd3B1AR17 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Chd3B1AR17 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Chd3B1AR17 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Chd3B1AR17 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Chd3B1AR17 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Chd3B1AR17 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Chd3B1AR17 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Chd3B1AR17 Gm5577-201ENSMUST00000134600 1434 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Chd3B1AR17 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Chd3B1AR17 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Chd3B1AR17 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Chd3B1AR17 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
Chd3B1AR17 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Chd3B1AR17 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Chd3B1AR17 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Chd3B1AR17 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Chd3B1AR17 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Chd3B1AR17 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Chd3B1AR17 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Chd3B1AR17 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Chd3B1AR17 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Chd3B1AR17 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Chd3B1AR17 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Chd3B1AR17 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC19.93■□□□□ 0.78
Chd3B1AR17 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Chd3B1AR17 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Chd3B1AR17 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Chd3B1AR17 Gm27045-201ENSMUST00000182145 1402 ntBASIC19.93■□□□□ 0.78
Chd3B1AR17 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
Chd3B1AR17 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC19.93■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 17.3 ms