Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Trav1A0A075B5Z4 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC18.98■□□□□ 0.63
Trav1A0A075B5Z4 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Trav1A0A075B5Z4 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trav1A0A075B5Z4 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trav1A0A075B5Z4 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trav1A0A075B5Z4 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Trav1A0A075B5Z4 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Trav1A0A075B5Z4 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav1A0A075B5Z4 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav1A0A075B5Z4 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav1A0A075B5Z4 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav1A0A075B5Z4 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
Trav1A0A075B5Z4 Gm40881-201ENSMUST00000223397 166 ntBASIC18.97■□□□□ 0.63
Trav1A0A075B5Z4 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
Trav1A0A075B5Z4 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
Trav1A0A075B5Z4 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC18.97■□□□□ 0.63
Trav1A0A075B5Z4 Art5-204ENSMUST00000106937 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav1A0A075B5Z4 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Trav1A0A075B5Z4 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Trav1A0A075B5Z4 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trav1A0A075B5Z4 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trav1A0A075B5Z4 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Trav1A0A075B5Z4 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav1A0A075B5Z4 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav1A0A075B5Z4 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav1A0A075B5Z4 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav1A0A075B5Z4 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC18.95■□□□□ 0.62
Trav1A0A075B5Z4 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC18.95■□□□□ 0.62
Trav1A0A075B5Z4 Gm7143-201ENSMUST00000222811 859 ntBASIC18.95■□□□□ 0.62
Trav1A0A075B5Z4 Ptger3-202ENSMUST00000173533 2097 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav1A0A075B5Z4 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
Trav1A0A075B5Z4 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Trav1A0A075B5Z4 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Trav1A0A075B5Z4 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav1A0A075B5Z4 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav1A0A075B5Z4 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav1A0A075B5Z4 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC18.94■□□□□ 0.62
Trav1A0A075B5Z4 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC18.94■□□□□ 0.62
Trav1A0A075B5Z4 Gm18755-201ENSMUST00000218030 1099 ntBASIC18.94■□□□□ 0.62
Trav1A0A075B5Z4 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trav1A0A075B5Z4 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trav1A0A075B5Z4 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Trav1A0A075B5Z4 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav1A0A075B5Z4 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav1A0A075B5Z4 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trav1A0A075B5Z4 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav1A0A075B5Z4 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trav1A0A075B5Z4 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC18.93■□□□□ 0.62
Trav1A0A075B5Z4 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav1A0A075B5Z4 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trav1A0A075B5Z4 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav1A0A075B5Z4 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav1A0A075B5Z4 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav1A0A075B5Z4 Zbed3-202ENSMUST00000221807 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav1A0A075B5Z4 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav1A0A075B5Z4 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC18.92■□□□□ 0.62
Trav1A0A075B5Z4 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav1A0A075B5Z4 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trav1A0A075B5Z4 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav1A0A075B5Z4 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trav1A0A075B5Z4 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav1A0A075B5Z4 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Trav1A0A075B5Z4 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC18.91■□□□□ 0.62
Trav1A0A075B5Z4 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav1A0A075B5Z4 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Trav1A0A075B5Z4 Gramd1a-202ENSMUST00000085636 2543 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
Trav1A0A075B5Z4 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav1A0A075B5Z4 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav1A0A075B5Z4 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav1A0A075B5Z4 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trav1A0A075B5Z4 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav1A0A075B5Z4 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav1A0A075B5Z4 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav1A0A075B5Z4 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav1A0A075B5Z4 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
Trav1A0A075B5Z4 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
Trav1A0A075B5Z4 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Trav1A0A075B5Z4 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC18.89■□□□□ 0.61
Trav1A0A075B5Z4 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Trav1A0A075B5Z4 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Trav1A0A075B5Z4 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
Trav1A0A075B5Z4 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav1A0A075B5Z4 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Trav1A0A075B5Z4 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav1A0A075B5Z4 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Trav1A0A075B5Z4 Inpp5a-203ENSMUST00000106098 2826 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav1A0A075B5Z4 AC166356.1-201ENSMUST00000228236 1426 ntBASIC18.88■□□□□ 0.61
Trav1A0A075B5Z4 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
Trav1A0A075B5Z4 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav1A0A075B5Z4 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav1A0A075B5Z4 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav1A0A075B5Z4 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav1A0A075B5Z4 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav1A0A075B5Z4 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
Trav1A0A075B5Z4 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC18.87■□□□□ 0.61
Trav1A0A075B5Z4 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav1A0A075B5Z4 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav1A0A075B5Z4 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trav1A0A075B5Z4 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 40.7 ms