Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Med25-211ENSMUST00000208551 2678 ntTSL 2 BASIC10.82□□□□□ -0.68
Cdx2P43241 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Arid3b-209ENSMUST00000171444 4171 ntAPPRIS P2 TSL 5 BASIC10.82□□□□□ -0.68
Cdx2P43241 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Ptgdr-201ENSMUST00000095959 3187 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Lmln-201ENSMUST00000023497 6147 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Metap2-201ENSMUST00000047910 4424 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Hyal3-201ENSMUST00000040059 1830 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Gm26826-201ENSMUST00000181317 1395 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Gm38344-201ENSMUST00000195306 1353 ntBASIC10.82□□□□□ -0.68
Cdx2P43241 Pou2af1-201ENSMUST00000034554 2548 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Pfkfb3-202ENSMUST00000049849 2076 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Fas-202ENSMUST00000112472 555 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Plac8-203ENSMUST00000112910 1224 ntAPPRIS P1 TSL 2 BASIC10.82□□□□□ -0.68
Cdx2P43241 Tspan32os-201ENSMUST00000131740 975 ntTSL 2 BASIC10.82□□□□□ -0.68
Cdx2P43241 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Zfp961-203ENSMUST00000132848 781 ntTSL 5 BASIC10.82□□□□□ -0.68
Cdx2P43241 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Gm25226-201ENSMUST00000158198 123 ntBASIC10.82□□□□□ -0.68
Cdx2P43241 Gm5529-201ENSMUST00000165691 891 ntBASIC10.82□□□□□ -0.68
Cdx2P43241 Vmn1r-ps63-201ENSMUST00000174565 989 ntBASIC10.82□□□□□ -0.68
Cdx2P43241 Gm44696-201ENSMUST00000181943 1229 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Gm29431-201ENSMUST00000189848 449 ntTSL 5 BASIC10.82□□□□□ -0.68
Cdx2P43241 Gm31274-201ENSMUST00000197356 229 ntBASIC10.82□□□□□ -0.68
Cdx2P43241 Gm43752-201ENSMUST00000198475 697 ntBASIC10.82□□□□□ -0.68
Cdx2P43241 Gm9758-201ENSMUST00000035980 1167 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Lsm8-201ENSMUST00000056398 807 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Catsperz-201ENSMUST00000057716 781 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Try5-201ENSMUST00000064324 801 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Rpl3-201ENSMUST00000081650 1293 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 4930572O03Rik-201ENSMUST00000092696 1169 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 4631405J19Rik-201ENSMUST00000099699 1225 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Gm37472-201ENSMUST00000192342 4052 ntBASIC10.82□□□□□ -0.68
Cdx2P43241 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Abat-201ENSMUST00000065987 4636 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Usp14-201ENSMUST00000092096 2360 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Acnat2-201ENSMUST00000081541 1664 ntAPPRIS P2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
Cdx2P43241 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
Cdx2P43241 Alox5-207ENSMUST00000170186 1929 ntTSL 5 BASIC10.82□□□□□ -0.68
Cdx2P43241 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cdx2P43241 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Gm6268-201ENSMUST00000115253 1453 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Cdx2P43241 A530053M12Rik-201ENSMUST00000187918 1467 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Slc16a1-201ENSMUST00000046212 4426 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 4930458D05Rik-201ENSMUST00000142871 3055 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Gm807-201ENSMUST00000181742 1723 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Olfr1413-202ENSMUST00000214239 1724 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Cdx2P43241 Pex26-201ENSMUST00000088561 4093 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Il1f5-205ENSMUST00000147885 1392 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Wdr17-211ENSMUST00000175915 4619 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Cdx2P43241 Fbp2-201ENSMUST00000021907 1354 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 A130077B15Rik-201ENSMUST00000219429 2547 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Dclre1b-203ENSMUST00000106832 2299 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
Cdx2P43241 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Cdx2P43241 Anxa3-205ENSMUST00000198631 1523 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Gm22937-201ENSMUST00000103954 131 ntBASIC10.81□□□□□ -0.68
Cdx2P43241 Tcf7l2-206ENSMUST00000111652 1041 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 A230006K03Rik-202ENSMUST00000154958 901 ntTSL 5 BASIC10.81□□□□□ -0.68
Cdx2P43241 Fcgr2b-203ENSMUST00000159688 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Pfdn5-203ENSMUST00000165671 830 ntTSL 2 BASIC10.81□□□□□ -0.68
Cdx2P43241 4933417D19Rik-201ENSMUST00000181432 1229 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Gm5342-201ENSMUST00000181982 1003 ntBASIC10.81□□□□□ -0.68
Cdx2P43241 Gm19013-201ENSMUST00000183895 1222 ntBASIC10.81□□□□□ -0.68
Cdx2P43241 Gm19014-201ENSMUST00000184828 1189 ntBASIC10.81□□□□□ -0.68
Cdx2P43241 Gm43506-201ENSMUST00000200675 753 ntBASIC10.81□□□□□ -0.68
Cdx2P43241 BC028471-201ENSMUST00000200937 520 ntTSL 2 BASIC10.81□□□□□ -0.68
Cdx2P43241 Gm44507-201ENSMUST00000206249 343 ntTSL 5 BASIC10.81□□□□□ -0.68
Cdx2P43241 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Apoa5-205ENSMUST00000215187 495 ntTSL 5 BASIC10.81□□□□□ -0.68
Cdx2P43241 Gm17749-201ENSMUST00000216282 690 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Gm34973-201ENSMUST00000217087 572 ntTSL 3 BASIC10.81□□□□□ -0.68
Cdx2P43241 AC122891.1-201ENSMUST00000218671 268 ntBASIC10.81□□□□□ -0.68
Cdx2P43241 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Cdx2P43241 Maml2-202ENSMUST00000159294 6404 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Cdx2P43241 Zfp354a-202ENSMUST00000102766 2592 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Arhgap19-204ENSMUST00000177495 1652 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Aldoart2-201ENSMUST00000080123 1658 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Cdx2P43241 C1qtnf3-201ENSMUST00000022853 2338 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Cdx2P43241 Dars2-201ENSMUST00000035430 3619 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cdx2P43241 Syvn1-207ENSMUST00000156550 3363 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Cdx2P43241 Lmnb2-204ENSMUST00000179022 3370 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 63.9 ms