Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm8302-201ENSMUST00000119217 852 ntBASIC13.21□□□□□ -0.29
Traf1P39428 Gm12274-201ENSMUST00000120062 385 ntBASIC13.21□□□□□ -0.29
Traf1P39428 Gm15329-201ENSMUST00000121408 155 ntBASIC13.21□□□□□ -0.29
Traf1P39428 Elof1-202ENSMUST00000166335 1053 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
Traf1P39428 Gm20495-201ENSMUST00000173902 235 ntBASIC13.21□□□□□ -0.29
Traf1P39428 Dpf3-206ENSMUST00000177959 1298 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Traf1P39428 A430105J06Rik-201ENSMUST00000180869 1275 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
Traf1P39428 Gm35025-203ENSMUST00000193519 634 ntTSL 3 BASIC13.21□□□□□ -0.29
Traf1P39428 Gm44759-201ENSMUST00000206057 430 ntTSL 3 BASIC13.21□□□□□ -0.29
Traf1P39428 Gm4657-201ENSMUST00000213839 787 ntTSL 3 BASIC13.21□□□□□ -0.29
Traf1P39428 Gm4065-202ENSMUST00000218911 986 ntTSL 3 BASIC13.21□□□□□ -0.29
Traf1P39428 Omt2b-201ENSMUST00000043734 735 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.29
Traf1P39428 Radil-203ENSMUST00000110784 3106 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
Traf1P39428 Dgcr8-201ENSMUST00000009321 4320 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
Traf1P39428 Accs-202ENSMUST00000068513 1872 ntAPPRIS P3 TSL 5 BASIC13.21□□□□□ -0.3
Traf1P39428 Gm37600-201ENSMUST00000193764 3292 ntBASIC13.21□□□□□ -0.3
Traf1P39428 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
Traf1P39428 March7-202ENSMUST00000102747 2271 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Klhl29-202ENSMUST00000218384 2716 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Gusb-201ENSMUST00000026613 2687 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Abcc10-204ENSMUST00000167360 4866 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC13.2□□□□□ -0.3
Traf1P39428 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Serf2-202ENSMUST00000110615 876 ntTSL 2 BASIC13.2□□□□□ -0.3
Traf1P39428 Colca2-201ENSMUST00000114427 1263 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
Traf1P39428 4930405O22Rik-201ENSMUST00000164605 954 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Rps28-203ENSMUST00000173019 437 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
Traf1P39428 Tlx1-202ENSMUST00000174617 806 ntTSL 5 BASIC13.2□□□□□ -0.3
Traf1P39428 Park2-204ENSMUST00000179624 1108 ntTSL 5 BASIC13.2□□□□□ -0.3
Traf1P39428 Gm8492-201ENSMUST00000182375 987 ntBASIC13.2□□□□□ -0.3
Traf1P39428 Gm8531-201ENSMUST00000188319 893 ntBASIC13.2□□□□□ -0.3
Traf1P39428 Gm37905-201ENSMUST00000195310 341 ntBASIC13.2□□□□□ -0.3
Traf1P39428 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC13.2□□□□□ -0.3
Traf1P39428 Tfr2-208ENSMUST00000199054 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 AC154826.1-201ENSMUST00000217369 498 ntTSL 5 BASIC13.2□□□□□ -0.3
Traf1P39428 1700011B04Rik-204ENSMUST00000220859 422 ntTSL 5 BASIC13.2□□□□□ -0.3
Traf1P39428 CT009527.1-201ENSMUST00000224205 339 ntBASIC13.2□□□□□ -0.3
Traf1P39428 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Smco2-201ENSMUST00000032433 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Trit1-201ENSMUST00000102649 2074 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Gtf2ird1-203ENSMUST00000100650 3487 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Akap10-202ENSMUST00000102650 3874 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Gm20757-201ENSMUST00000182870 1604 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Vsig10l-201ENSMUST00000107977 3836 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
Traf1P39428 Grpel2-201ENSMUST00000062991 4030 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 6820426E19Rik-201ENSMUST00000204274 1970 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
Traf1P39428 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC13.2□□□□□ -0.3
Traf1P39428 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Dnajb6-201ENSMUST00000008733 2918 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Pcdhb17-201ENSMUST00000053856 4660 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Traf1P39428 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC13.19□□□□□ -0.3
Traf1P39428 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Sema4c-208ENSMUST00000195620 3640 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Gm37368-201ENSMUST00000193173 3212 ntBASIC13.19□□□□□ -0.3
Traf1P39428 Ldhd-201ENSMUST00000070004 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Gm9415-201ENSMUST00000200462 1321 ntBASIC13.19□□□□□ -0.3
Traf1P39428 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Abcc10-201ENSMUST00000047970 4885 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC13.19□□□□□ -0.3
Traf1P39428 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Dpyd-201ENSMUST00000039177 4492 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Rragd-202ENSMUST00000084747 4295 ntTSL 5 BASIC13.19□□□□□ -0.3
Traf1P39428 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Triobp-203ENSMUST00000109689 7187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Traf1P39428 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Gm20714-202ENSMUST00000176436 748 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Gm43552-201ENSMUST00000196121 365 ntAPPRIS P1 TSL 3 BASIC13.19□□□□□ -0.3
Traf1P39428 Gm2762-206ENSMUST00000202502 335 ntTSL 3 BASIC13.19□□□□□ -0.3
Traf1P39428 Gm2762-208ENSMUST00000202976 568 ntTSL 3 BASIC13.19□□□□□ -0.3
Traf1P39428 Gm17825-201ENSMUST00000206836 794 ntBASIC13.19□□□□□ -0.3
Traf1P39428 Gm8436-201ENSMUST00000210152 1080 ntBASIC13.19□□□□□ -0.3
Traf1P39428 Gm5749-201ENSMUST00000210673 1090 ntBASIC13.19□□□□□ -0.3
Traf1P39428 Proz-203ENSMUST00000211363 984 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Gm3028-201ENSMUST00000213805 1119 ntBASIC13.19□□□□□ -0.3
Traf1P39428 Gm4065-201ENSMUST00000218715 763 ntTSL 2 BASIC13.19□□□□□ -0.3
Traf1P39428 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC13.19□□□□□ -0.3
Traf1P39428 Cmtm2a-201ENSMUST00000034344 1081 ntAPPRIS P2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Olfr1395-201ENSMUST00000059379 954 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Traf1P39428 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC13.19□□□□□ -0.3
Traf1P39428 Ces2a-201ENSMUST00000034346 1960 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Plscr1-201ENSMUST00000093801 2302 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Sash3-201ENSMUST00000033427 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Traf1P39428 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 317.8 ms