Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Rcor3-201ENSMUST00000073279 3748 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Nrf1-220ENSMUST00000170535 1527 ntTSL 5 BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Olfr1267-ps1-201ENSMUST00000118957 930 ntAPPRIS P1 BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 E130307A14Rik-203ENSMUST00000136862 608 ntTSL 3 BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Gm20400-201ENSMUST00000173695 665 ntTSL 3 BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 5730585A16Rik-201ENSMUST00000193457 1027 ntBASIC12.39□□□□□ -0.43
Trim54Q9ERP3 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Gm3726-201ENSMUST00000203110 785 ntBASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Gm44831-201ENSMUST00000208469 2989 ntBASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Gm8436-201ENSMUST00000210152 1080 ntBASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Gm5749-201ENSMUST00000210673 1090 ntBASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Gm4065-202ENSMUST00000218911 986 ntTSL 3 BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 CT010506.1-201ENSMUST00000223673 349 ntBASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Ap3s1-202ENSMUST00000224622 978 ntBASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Nmi-201ENSMUST00000028314 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Uqcc1-201ENSMUST00000006036 808 ntTSL 5 BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Gm5805-201ENSMUST00000072779 456 ntBASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Gm4744-201ENSMUST00000073642 792 ntAPPRIS P1 TSL 5 BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 n-R5s185-201ENSMUST00000083953 119 ntBASIC12.39□□□□□ -0.43
Trim54Q9ERP3 AC158636.1-201ENSMUST00000220118 1393 ntBASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Itpr3-201ENSMUST00000049308 8990 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Tgfbr1-202ENSMUST00000044234 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
Trim54Q9ERP3 5033403F01Rik-201ENSMUST00000181376 1678 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Nxph1-202ENSMUST00000160300 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Cpa5-202ENSMUST00000115138 1778 ntTSL 5 BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Palb2-204ENSMUST00000106469 2559 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Rfx6-204ENSMUST00000219364 2682 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Kdm4d-201ENSMUST00000058796 2695 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Vdr-201ENSMUST00000023119 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Tiam1-214ENSMUST00000164263 3569 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Polr1b-201ENSMUST00000028874 2769 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Clec16a-203ENSMUST00000115823 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Spata20-201ENSMUST00000041705 2627 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Als2cl-201ENSMUST00000084926 5079 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Gm8111-201ENSMUST00000117659 987 ntBASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Gm11500-201ENSMUST00000118237 601 ntBASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Rnf181-212ENSMUST00000154098 969 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Ddt-202ENSMUST00000172820 574 ntTSL 2 BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Gm6407-201ENSMUST00000176468 549 ntBASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Gm23694-201ENSMUST00000179335 110 ntBASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Gm9135-201ENSMUST00000182963 990 ntBASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Dydc1-203ENSMUST00000189865 995 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Gm45570-201ENSMUST00000211137 495 ntTSL 5 BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Slc37a4-202ENSMUST00000213268 1353 ntAPPRIS ALT1 TSL 5 BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Sec23a-201ENSMUST00000021375 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Als2cl-206ENSMUST00000155014 5150 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Rnf17-201ENSMUST00000095793 5264 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 2810407A14Rik-201ENSMUST00000069809 1699 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC12.38□□□□□ -0.43
Trim54Q9ERP3 Mpv17l-204ENSMUST00000141971 2155 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trim54Q9ERP3 Gm44190-201ENSMUST00000205083 1401 ntBASIC12.37□□□□□ -0.43
Trim54Q9ERP3 Prkch-201ENSMUST00000021527 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trim54Q9ERP3 AC130823.1-201ENSMUST00000228929 1549 ntBASIC12.37□□□□□ -0.43
Trim54Q9ERP3 Rpl4-201ENSMUST00000034966 1538 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trim54Q9ERP3 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trim54Q9ERP3 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trim54Q9ERP3 Stat3-202ENSMUST00000103114 6042 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trim54Q9ERP3 Chd3-202ENSMUST00000108661 7261 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
Trim54Q9ERP3 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trim54Q9ERP3 Cd2bp2-202ENSMUST00000166791 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trim54Q9ERP3 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trim54Q9ERP3 Gm44806-201ENSMUST00000205574 2303 ntBASIC12.37□□□□□ -0.43
Trim54Q9ERP3 Onecut1-201ENSMUST00000056006 3957 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trim54Q9ERP3 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trim54Q9ERP3 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Trim54Q9ERP3 AC122840.1-201ENSMUST00000220915 3334 ntBASIC12.37□□□□□ -0.43
Trim54Q9ERP3 Adamts14-202ENSMUST00000120336 3645 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
Trim54Q9ERP3 Gtf2h5-202ENSMUST00000100955 879 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Trim54Q9ERP3 0610010K14Rik-206ENSMUST00000108576 576 ntAPPRIS ALT1 TSL 2 BASIC12.37□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 71.4 ms