Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Gm26313-201ENSMUST00000157770 308 ntBASIC11.84□□□□□ -0.51
Sox9Q04887 Plac9a-203ENSMUST00000183725 439 ntTSL 3 BASIC11.84□□□□□ -0.51
Sox9Q04887 Plac9b-202ENSMUST00000183811 396 ntTSL 3 BASIC11.84□□□□□ -0.51
Sox9Q04887 Gm44323-201ENSMUST00000198689 129 ntBASIC11.84□□□□□ -0.51
Sox9Q04887 Gm43866-201ENSMUST00000203894 839 ntBASIC11.84□□□□□ -0.51
Sox9Q04887 Gm44814-201ENSMUST00000207018 434 ntBASIC11.84□□□□□ -0.51
Sox9Q04887 Gm44698-201ENSMUST00000207382 384 ntTSL 5 BASIC11.84□□□□□ -0.51
Sox9Q04887 Il18-203ENSMUST00000213916 885 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Gm26782-203ENSMUST00000227103 751 ntBASIC11.84□□□□□ -0.51
Sox9Q04887 AC121567.1-201ENSMUST00000227213 842 ntBASIC11.84□□□□□ -0.51
Sox9Q04887 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Olfr985-201ENSMUST00000060345 1116 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Sox9Q04887 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Slc16a1-201ENSMUST00000046212 4426 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Sox9Q04887 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Mybl1-202ENSMUST00000115468 2493 ntTSL 5 BASIC11.84□□□□□ -0.51
Sox9Q04887 Reep3-201ENSMUST00000020023 5430 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 AL732309.2-201ENSMUST00000228052 3210 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Sox9Q04887 Pitpnm3-201ENSMUST00000075258 6555 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 1500004A13Rik-209ENSMUST00000185189 1659 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Fbf1-202ENSMUST00000106435 4651 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Trim46-201ENSMUST00000041022 3122 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 4933427G23Rik-201ENSMUST00000122963 2515 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Osr2-204ENSMUST00000228152 1324 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Sox9Q04887 Slc38a6-206ENSMUST00000140523 3032 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Klf3-202ENSMUST00000166409 1562 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Hmox1-201ENSMUST00000005548 1569 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Sox9Q04887 Rbm20-204ENSMUST00000164202 6592 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.51
Sox9Q04887 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 Hoxb13-201ENSMUST00000062709 2206 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 D030025P21Rik-202ENSMUST00000220643 3987 ntBASIC11.83□□□□□ -0.52
Sox9Q04887 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 Gm12912-201ENSMUST00000121596 1381 ntBASIC11.83□□□□□ -0.52
Sox9Q04887 Ceacam9-201ENSMUST00000001984 1396 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
Sox9Q04887 H2-M10.1-201ENSMUST00000025322 1394 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 Rabif-201ENSMUST00000047978 2861 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
Sox9Q04887 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 AC022682.1-201ENSMUST00000224624 2023 ntBASIC11.83□□□□□ -0.52
Sox9Q04887 Cacna2d1-201ENSMUST00000039370 3933 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 Gm23439-201ENSMUST00000104292 132 ntBASIC11.83□□□□□ -0.52
Sox9Q04887 Defa-ps17-201ENSMUST00000121849 171 ntBASIC11.83□□□□□ -0.52
Sox9Q04887 Gm12052-201ENSMUST00000142151 933 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 Bloc1s1-205ENSMUST00000153731 613 ntTSL 5 BASIC11.83□□□□□ -0.52
Sox9Q04887 Gm25394-201ENSMUST00000157338 133 ntBASIC11.83□□□□□ -0.52
Sox9Q04887 Gm4775-201ENSMUST00000169588 402 ntBASIC11.83□□□□□ -0.52
Sox9Q04887 Gm26119-201ENSMUST00000175601 104 ntBASIC11.83□□□□□ -0.52
Sox9Q04887 Gm25872-201ENSMUST00000177784 100 ntBASIC11.83□□□□□ -0.52
Sox9Q04887 Gm26716-201ENSMUST00000181227 415 ntTSL 5 BASIC11.83□□□□□ -0.52
Sox9Q04887 Ppm1a-205ENSMUST00000222896 1103 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 4933407L21Rik-201ENSMUST00000027426 1146 ntAPPRIS P5 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 Ctrl-201ENSMUST00000034368 879 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 Iqcf1-201ENSMUST00000085114 613 ntAPPRIS P4 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 Gm10581-201ENSMUST00000097986 231 ntBASIC11.83□□□□□ -0.52
Sox9Q04887 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC11.83□□□□□ -0.52
Sox9Q04887 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC11.83□□□□□ -0.52
Sox9Q04887 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 Pcdhb1-201ENSMUST00000052366 2588 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Sox9Q04887 Zrsr2-201ENSMUST00000090840 3867 ntTSL 2 BASIC11.83□□□□□ -0.52
Sox9Q04887 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 Prdm9-205ENSMUST00000147532 1447 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC11.83□□□□□ -0.52
Sox9Q04887 AC122228.1-201ENSMUST00000223113 2057 ntTSL 5 BASIC11.83□□□□□ -0.52
Sox9Q04887 Gm43463-201ENSMUST00000195967 1803 ntBASIC11.83□□□□□ -0.52
Sox9Q04887 Zfp809-206ENSMUST00000215902 1800 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 9530077C05Rik-201ENSMUST00000058868 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Sox9Q04887 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 Adora1-201ENSMUST00000038191 3625 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Sox9Q04887 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC11.82□□□□□ -0.52
Sox9Q04887 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Sfxn3-203ENSMUST00000111954 2867 ntTSL 5 BASIC11.82□□□□□ -0.52
Sox9Q04887 AC159195.1-201ENSMUST00000225867 2086 ntBASIC11.82□□□□□ -0.52
Sox9Q04887 Chodl-202ENSMUST00000069148 2051 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Accsl-201ENSMUST00000099690 2224 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Rnh1-202ENSMUST00000167493 1656 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Arhgef2-203ENSMUST00000170653 4238 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Fcrl1-201ENSMUST00000072480 1980 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Sox9Q04887 Nup188-202ENSMUST00000113634 534 ntTSL 2 BASIC11.82□□□□□ -0.52
Sox9Q04887 Gm13281-201ENSMUST00000120871 567 ntBASIC11.82□□□□□ -0.52
Sox9Q04887 Gm14113-201ENSMUST00000121399 976 ntBASIC11.82□□□□□ -0.52
Sox9Q04887 Ppt1-204ENSMUST00000121870 986 ntTSL 2 BASIC11.82□□□□□ -0.52
Sox9Q04887 Gm11651-201ENSMUST00000130673 529 ntTSL 3 BASIC11.82□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms