Protein–RNA interactions for Protein: Q38HM4

Trim63, E3 ubiquitin-protein ligase TRIM63, mousemouse

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim63Q38HM4 Gm44103-201ENSMUST00000204364 3662 ntBASIC9.39□□□□□ -0.91
Trim63Q38HM4 Specc1-214ENSMUST00000202389 3363 ntAPPRIS ALT2 TSL 5 BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Traf3-202ENSMUST00000060274 6896 ntTSL 5 BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Mfsd2b-201ENSMUST00000045921 2490 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Scamp1-203ENSMUST00000152555 1877 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Oxsm-202ENSMUST00000112624 1586 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Dhx58os-201ENSMUST00000137154 1594 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Rplp2-203ENSMUST00000106004 421 ntAPPRIS P1 TSL 2 BASIC9.39□□□□□ -0.91
Trim63Q38HM4 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC9.39□□□□□ -0.91
Trim63Q38HM4 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Scn2b-202ENSMUST00000170998 4656 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Gm23363-201ENSMUST00000175024 79 ntBASIC9.39□□□□□ -0.91
Trim63Q38HM4 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Mir8117-201ENSMUST00000184773 107 ntBASIC9.39□□□□□ -0.91
Trim63Q38HM4 Gm42953-201ENSMUST00000199363 581 ntTSL 3 BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Gm42550-201ENSMUST00000201553 960 ntBASIC9.39□□□□□ -0.91
Trim63Q38HM4 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC9.39□□□□□ -0.91
Trim63Q38HM4 3110079O15Rik-201ENSMUST00000027476 478 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Cyct-201ENSMUST00000028430 655 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Rnaseh2a-201ENSMUST00000065049 1006 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 6430531B16Rik-201ENSMUST00000097970 1161 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Idua-201ENSMUST00000071650 3536 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Copa-206ENSMUST00000135192 4622 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Pdgfra-202ENSMUST00000168162 6834 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Cers4-201ENSMUST00000008350 9475 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Hemgn-201ENSMUST00000071096 2321 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Nrn1-204ENSMUST00000224323 1779 ntBASIC9.39□□□□□ -0.91
Trim63Q38HM4 Azin1-203ENSMUST00000110329 4217 ntAPPRIS P1 TSL 2 BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Tnr-201ENSMUST00000111669 4424 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Rgs6-209ENSMUST00000186848 1472 ntTSL 5 BASIC9.39□□□□□ -0.91
Trim63Q38HM4 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Gm40289-201ENSMUST00000201470 2268 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Rbm27-202ENSMUST00000091920 6266 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Zfp420-202ENSMUST00000074876 2537 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Mfn2-201ENSMUST00000030884 4341 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Diexf-201ENSMUST00000085555 5570 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Efcab6-207ENSMUST00000156187 5012 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Ndufab1-201ENSMUST00000033157 3479 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Trim63Q38HM4 Uimc1-204ENSMUST00000127195 2936 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Slc19a1-208ENSMUST00000136925 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Anp32e-201ENSMUST00000015893 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Gpi1-201ENSMUST00000038027 2884 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Atp6v0a4-202ENSMUST00000114908 3307 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Slc34a2-201ENSMUST00000094787 4176 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Gm44531-201ENSMUST00000208364 2000 ntBASIC9.38□□□□□ -0.91
Trim63Q38HM4 Gm43242-201ENSMUST00000199507 1776 ntBASIC9.38□□□□□ -0.91
Trim63Q38HM4 Slc13a4-201ENSMUST00000031868 3427 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Ankrd34c-202ENSMUST00000185470 2475 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Gp2-201ENSMUST00000033255 1993 ntAPPRIS P2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Igkv3-12-201ENSMUST00000103396 359 ntAPPRIS P1 BASIC9.38□□□□□ -0.91
Trim63Q38HM4 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Nnat-202ENSMUST00000109526 1213 ntAPPRIS P4 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Gm14716-201ENSMUST00000120138 718 ntBASIC9.38□□□□□ -0.91
Trim63Q38HM4 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Pcp2-204ENSMUST00000136105 504 ntAPPRIS P4 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Gm20878-206ENSMUST00000153997 903 ntAPPRIS P2 TSL 2 BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Rprl2-201ENSMUST00000157150 290 ntBASIC9.38□□□□□ -0.91
Trim63Q38HM4 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC9.38□□□□□ -0.91
Trim63Q38HM4 4930594M17Rik-201ENSMUST00000181204 1033 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC9.38□□□□□ -0.91
Trim63Q38HM4 AC164629.2-201ENSMUST00000217916 270 ntBASIC9.38□□□□□ -0.91
Trim63Q38HM4 AC140293.1-201ENSMUST00000225626 1247 ntBASIC9.38□□□□□ -0.91
Trim63Q38HM4 Ufsp1-201ENSMUST00000052825 1037 ntAPPRIS P1 BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Cebpe-201ENSMUST00000064290 1241 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Spaca4-201ENSMUST00000094424 707 ntAPPRIS P1 BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Sh3bgrl-201ENSMUST00000033598 2882 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Atp13a4-201ENSMUST00000039090 2878 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Lmbrd1-206ENSMUST00000191471 4453 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Zc3hav1-202ENSMUST00000114898 3052 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Rpgrip1-213ENSMUST00000181401 3963 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Ascc1-202ENSMUST00000164083 1473 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Pde10a-211ENSMUST00000149440 4897 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Igf1r-201ENSMUST00000005671 11409 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Nrros-204ENSMUST00000126869 2540 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Trak1-211ENSMUST00000211187 4043 ntAPPRIS ALT2 TSL 5 BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Olfr484-202ENSMUST00000214722 4676 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Cd8a-201ENSMUST00000066747 3128 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Gm8146-201ENSMUST00000192106 1847 ntBASIC9.38□□□□□ -0.91
Trim63Q38HM4 Mettl8-201ENSMUST00000090849 1842 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Kcnmb1-201ENSMUST00000020362 4191 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Trim63Q38HM4 Lrrc55-201ENSMUST00000099930 2217 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Trim63Q38HM4 Alkbh3-202ENSMUST00000111240 1395 ntTSL 5 BASIC9.37□□□□□ -0.91
Trim63Q38HM4 Lig3-211ENSMUST00000173722 5797 ntAPPRIS P3 TSL 5 BASIC9.37□□□□□ -0.91
Trim63Q38HM4 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC9.37□□□□□ -0.91
Trim63Q38HM4 Rps6kc1-201ENSMUST00000061611 3995 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
Trim63Q38HM4 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms