Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Zfp68-203ENSMUST00000110905 4749 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Lhx9-205ENSMUST00000112030 4633 ntTSL 5 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Gm20671-201ENSMUST00000144673 1731 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Myh2-201ENSMUST00000018641 6018 ntAPPRIS P1 TSL 5 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Spo11-203ENSMUST00000109126 1625 ntTSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Hmga1-203ENSMUST00000117600 1635 ntAPPRIS P3 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Gm35850-202ENSMUST00000211705 2120 ntBASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Slc10a6-201ENSMUST00000031263 2124 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Pcdhb17-201ENSMUST00000053856 4660 ntAPPRIS P1 BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Loxl3-201ENSMUST00000000707 4098 ntAPPRIS P1 TSL 1 (best) BASIC11.2□□□□□ -0.62
Col28a1Q2UY11 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Abt1-201ENSMUST00000041782 4456 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Mab21l1-201ENSMUST00000075422 2492 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Slc38a5-202ENSMUST00000115590 1983 ntAPPRIS ALT2 TSL 2 BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 D830039M14Rik-202ENSMUST00000217740 3362 ntBASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Elavl2-201ENSMUST00000008633 3730 ntAPPRIS P4 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Gm26660-202ENSMUST00000223620 4112 ntBASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Pcgf3-201ENSMUST00000046975 7708 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Erich3-203ENSMUST00000189969 3460 ntBASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Epn3-202ENSMUST00000127305 3884 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Bzw1-201ENSMUST00000050552 3876 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Igkv3-12-201ENSMUST00000103396 359 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Ncmap-202ENSMUST00000105857 958 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Ccdc28b-202ENSMUST00000106035 821 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Gm14109-201ENSMUST00000118814 309 ntBASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Gm13461-201ENSMUST00000120980 662 ntBASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Gm12714-201ENSMUST00000143391 669 ntTSL 3 BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Gm13449-201ENSMUST00000153559 1231 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Mcpt8-201ENSMUST00000015594 836 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Gm25732-201ENSMUST00000175168 60 ntBASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Gm25700-201ENSMUST00000177693 110 ntBASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Gm5523-201ENSMUST00000180415 997 ntBASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Gm3096-201ENSMUST00000185770 364 ntBASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Gm8885-201ENSMUST00000189382 598 ntBASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Gm6439-201ENSMUST00000199849 862 ntBASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Gm8959-201ENSMUST00000213150 571 ntBASIC11.19□□□□□ -0.62
Col28a1Q2UY11 4930447K03Rik-201ENSMUST00000222745 1033 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Kat6b-201ENSMUST00000069648 7649 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Aldoart2-201ENSMUST00000080123 1658 ntAPPRIS P1 BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Asb15-201ENSMUST00000031696 2088 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Snx13-202ENSMUST00000163677 3681 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Acin1-203ENSMUST00000111484 4048 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Cpne9-201ENSMUST00000041203 2777 ntAPPRIS P1 TSL 5 BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Exoc4-203ENSMUST00000115080 2369 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Srsf6-203ENSMUST00000130411 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Adgrl3-201ENSMUST00000036068 6203 ntAPPRIS ALT2 TSL 5 BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Adgrl3-202ENSMUST00000072521 6203 ntAPPRIS P3 TSL 5 BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 9030407P20Rik-201ENSMUST00000180933 2310 ntTSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Ica1-204ENSMUST00000115520 1876 ntAPPRIS P2 TSL 5 BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 AC129931.1-201ENSMUST00000228865 1861 ntBASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Ubxn6-201ENSMUST00000019722 2949 ntAPPRIS P1 TSL 1 (best) BASIC11.19□□□□□ -0.62
Col28a1Q2UY11 Tgfbr1-201ENSMUST00000007757 5756 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Gm18626-201ENSMUST00000221512 1409 ntBASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Cd6-202ENSMUST00000039043 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Pdzk1-201ENSMUST00000058865 2406 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 BC034090-201ENSMUST00000035914 3797 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Celf3-213ENSMUST00000199775 2351 ntAPPRIS ALT1 TSL 5 BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Gem-202ENSMUST00000108304 2006 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Togaram1-207ENSMUST00000223166 6386 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Casc1-203ENSMUST00000111728 2682 ntAPPRIS ALT2 TSL 2 BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Plekhg4-203ENSMUST00000160191 3339 ntAPPRIS ALT2 TSL 5 BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Ccdc62-201ENSMUST00000094320 3924 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Gm7841-201ENSMUST00000122108 1629 ntBASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Cyb5d1-202ENSMUST00000108660 1034 ntTSL 5 BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Tpm1-210ENSMUST00000113693 1054 ntTSL 5 BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Mitd1-205ENSMUST00000139725 1175 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Gm27239-201ENSMUST00000184638 642 ntTSL 3 BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Gm29787-201ENSMUST00000222129 849 ntBASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Syngr4-201ENSMUST00000039049 967 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Pxt1-201ENSMUST00000051526 710 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Kcnk7-201ENSMUST00000052448 1226 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Gm8385-201ENSMUST00000058999 643 ntBASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Prkcd-205ENSMUST00000112207 2139 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Arhgef9-201ENSMUST00000113873 2117 ntTSL 5 BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Cacna1s-202ENSMUST00000112068 6018 ntAPPRIS ALT2 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Foxn2-201ENSMUST00000112238 5085 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Ank3-205ENSMUST00000092433 5072 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Nmnat1-203ENSMUST00000119921 2657 ntTSL 1 (best) BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Gm37954-201ENSMUST00000195400 2071 ntBASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Treml4-201ENSMUST00000059873 1744 ntAPPRIS P3 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC11.18□□□□□ -0.62
Col28a1Q2UY11 BC004004-201ENSMUST00000064709 2803 ntAPPRIS P1 TSL 1 (best) BASIC11.17□□□□□ -0.62
Retrieved 100 of 76,532 protein–RNA pairs in 56.7 ms