Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Smyd3-202ENSMUST00000111134 1229 ntTSL 2 BASIC13.7□□□□□ -0.22
Rfx1P48377 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Rfx1P48377 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
Rfx1P48377 Gm3096-201ENSMUST00000185770 364 ntBASIC13.7□□□□□ -0.22
Rfx1P48377 Gm9728-201ENSMUST00000200197 1055 ntBASIC13.7□□□□□ -0.22
Rfx1P48377 Olfr284-202ENSMUST00000206647 966 ntBASIC13.7□□□□□ -0.22
Rfx1P48377 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Rfx1P48377 6820426E19Rik-201ENSMUST00000204274 1970 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Rfx1P48377 C730027H18Rik-201ENSMUST00000218381 2300 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Rfx1P48377 Gm39168-201ENSMUST00000210181 1423 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Rfx1P48377 Ankrd34c-202ENSMUST00000185470 2475 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Rfx1P48377 Mms19-201ENSMUST00000026168 3162 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Rfx1P48377 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Rfx1P48377 Cct3-208ENSMUST00000168062 1943 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Rfx1P48377 Plek2-201ENSMUST00000021544 1583 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Rfx1P48377 Angptl2-201ENSMUST00000004208 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Rfx1P48377 Cbfa2t2-204ENSMUST00000109725 6080 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Rfx1P48377 Gm807-201ENSMUST00000181742 1723 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Rfx1P48377 Ndrg4-203ENSMUST00000080666 2738 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
Rfx1P48377 Bod1l-204ENSMUST00000202908 10399 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
Rfx1P48377 Ptgfr-201ENSMUST00000029670 6624 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Eml5-201ENSMUST00000065716 9482 ntTSL 5 BASIC13.69□□□□□ -0.22
Rfx1P48377 Angel1-201ENSMUST00000021682 3850 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Pfkfb2-208ENSMUST00000187089 1690 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Rfx1P48377 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 A1cf-202ENSMUST00000224304 2968 ntAPPRIS ALT1 BASIC13.69□□□□□ -0.22
Rfx1P48377 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Slc10a6-201ENSMUST00000031263 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Tenm3-201ENSMUST00000033965 8961 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Ift88-201ENSMUST00000122063 3088 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Ets2-201ENSMUST00000023612 3890 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Vrk1-204ENSMUST00000220629 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC13.69□□□□□ -0.22
Rfx1P48377 Snora78-201ENSMUST00000158630 128 ntBASIC13.69□□□□□ -0.22
Rfx1P48377 Cdk3-ps-202ENSMUST00000174177 915 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Rfx1P48377 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC13.69□□□□□ -0.22
Rfx1P48377 Gm28937-201ENSMUST00000185413 695 ntBASIC13.69□□□□□ -0.22
Rfx1P48377 Gm29400-201ENSMUST00000187208 695 ntBASIC13.69□□□□□ -0.22
Rfx1P48377 Gm28662-201ENSMUST00000188446 695 ntBASIC13.69□□□□□ -0.22
Rfx1P48377 Gm28251-201ENSMUST00000188835 695 ntBASIC13.69□□□□□ -0.22
Rfx1P48377 Gm37318-201ENSMUST00000194325 695 ntBASIC13.69□□□□□ -0.22
Rfx1P48377 Gm38017-201ENSMUST00000194768 695 ntBASIC13.69□□□□□ -0.22
Rfx1P48377 Gm37287-201ENSMUST00000195449 695 ntBASIC13.69□□□□□ -0.22
Rfx1P48377 Gm37793-201ENSMUST00000195548 695 ntBASIC13.69□□□□□ -0.22
Rfx1P48377 Gm18187-201ENSMUST00000196476 984 ntBASIC13.69□□□□□ -0.22
Rfx1P48377 Sox2ot-208ENSMUST00000197103 802 ntTSL 2 BASIC13.69□□□□□ -0.22
Rfx1P48377 Gm45609-204ENSMUST00000209837 1207 ntTSL 5 BASIC13.69□□□□□ -0.22
Rfx1P48377 Tmem54-202ENSMUST00000030577 988 ntAPPRIS ALT2 TSL 3 BASIC13.69□□□□□ -0.22
Rfx1P48377 Pemt-201ENSMUST00000000310 953 ntAPPRIS P1 TSL 3 BASIC13.69□□□□□ -0.22
Rfx1P48377 Prss34-201ENSMUST00000037453 1216 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Coq7-202ENSMUST00000098090 1215 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Kcns2-202ENSMUST00000228725 4906 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
Rfx1P48377 Vamp1-202ENSMUST00000063588 1400 ntTSL 2 BASIC13.69□□□□□ -0.22
Rfx1P48377 Ankrd33-201ENSMUST00000070875 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Serpina16-202ENSMUST00000164148 1582 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
Rfx1P48377 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC13.69□□□□□ -0.22
Rfx1P48377 Syncrip-208ENSMUST00000174282 3404 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Ece1-201ENSMUST00000102518 4816 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Bace2-201ENSMUST00000047275 3736 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Ikzf1-201ENSMUST00000018798 1542 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 9330111N05Rik-203ENSMUST00000181508 1848 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Ncf1-202ENSMUST00000111275 2721 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Zswim9-201ENSMUST00000108532 3346 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
Rfx1P48377 Slc9a8-201ENSMUST00000047815 4521 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Ppp6r3-201ENSMUST00000025846 4841 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
Rfx1P48377 Zfat-205ENSMUST00000162173 3561 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Rfx1P48377 Pou1f1-201ENSMUST00000004964 1773 ntTSL 5 BASIC13.68□□□□□ -0.22
Rfx1P48377 Gm6793-201ENSMUST00000071732 1604 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Rfx1P48377 Ociad1-202ENSMUST00000071081 1311 ntTSL 3 BASIC13.68□□□□□ -0.22
Rfx1P48377 Smtn-210ENSMUST00000170588 3386 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Rfx1P48377 Pcdhb17-201ENSMUST00000053856 4660 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Rfx1P48377 Kng2-203ENSMUST00000115349 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Rfx1P48377 Gm43720-201ENSMUST00000159067 6411 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Rfx1P48377 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Rfx1P48377 Abhd18-201ENSMUST00000108077 3277 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Rfx1P48377 Pde1b-205ENSMUST00000227955 3258 ntAPPRIS ALT1 BASIC13.68□□□□□ -0.22
Rfx1P48377 Syk-201ENSMUST00000055087 5122 ntAPPRIS P2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Rfx1P48377 Adam8-202ENSMUST00000106069 3117 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Rfx1P48377 Adam8-201ENSMUST00000026546 3100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Rfx1P48377 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC13.68□□□□□ -0.22
Rfx1P48377 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC13.68□□□□□ -0.22
Rfx1P48377 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Rfx1P48377 1700069L16Rik-203ENSMUST00000162388 706 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Rfx1P48377 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC13.68□□□□□ -0.22
Rfx1P48377 Gm26740-201ENSMUST00000180456 358 ntTSL 3 BASIC13.68□□□□□ -0.22
Rfx1P48377 Hax1-205ENSMUST00000197767 1092 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Rfx1P48377 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC13.68□□□□□ -0.22
Rfx1P48377 Cradd-202ENSMUST00000217809 1115 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Rfx1P48377 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Rfx1P48377 Crybb2-201ENSMUST00000031295 724 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Rfx1P48377 Zdhhc12-201ENSMUST00000081838 1187 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Rfx1P48377 Myh10-203ENSMUST00000102611 7791 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Rfx1P48377 Wars-204ENSMUST00000161154 1824 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Rfx1P48377 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Rfx1P48377 Sptbn5-204ENSMUST00000156159 3625 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Rfx1P48377 AC091458.1-201ENSMUST00000220902 1361 ntBASIC13.68□□□□□ -0.22
Rfx1P48377 Rnf40-201ENSMUST00000033088 3906 ntTSL 5 BASIC13.68□□□□□ -0.22
Rfx1P48377 Gm43622-201ENSMUST00000200140 2019 ntBASIC13.68□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 56.3 ms