Protein–RNA interactions for Protein: P27548

Cd40lg, CD40 ligand, mousemouse

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cd40lgP27548 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cd40lgP27548 Sypl-201ENSMUST00000020885 2019 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cd40lgP27548 Phip-201ENSMUST00000034787 10756 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cd40lgP27548 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cd40lgP27548 Gm13812-201ENSMUST00000118061 1347 ntBASIC10.67□□□□□ -0.7
Cd40lgP27548 Gm13810-201ENSMUST00000118584 1347 ntBASIC10.67□□□□□ -0.7
Cd40lgP27548 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cd40lgP27548 Gstt2-208ENSMUST00000220440 2254 ntAPPRIS P1 TSL 5 BASIC10.67□□□□□ -0.7
Cd40lgP27548 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cd40lgP27548 Gm8522-201ENSMUST00000118416 1929 ntBASIC10.67□□□□□ -0.7
Cd40lgP27548 Gm43522-201ENSMUST00000196697 1922 ntBASIC10.67□□□□□ -0.7
Cd40lgP27548 Ighv5-2-201ENSMUST00000103442 350 ntAPPRIS ALT2 BASIC10.67□□□□□ -0.7
Cd40lgP27548 Timm10b-204ENSMUST00000106784 494 ntTSL 3 BASIC10.67□□□□□ -0.7
Cd40lgP27548 Ndufa3-202ENSMUST00000108644 351 ntTSL 3 BASIC10.67□□□□□ -0.7
Cd40lgP27548 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC10.67□□□□□ -0.7
Cd40lgP27548 Arvcf-202ENSMUST00000115610 3829 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Cd40lgP27548 Gm9062-201ENSMUST00000117712 727 ntBASIC10.67□□□□□ -0.7
Cd40lgP27548 Mcfd2-205ENSMUST00000145895 751 ntTSL 2 BASIC10.67□□□□□ -0.7
Cd40lgP27548 Mir5120-201ENSMUST00000175020 78 ntBASIC10.67□□□□□ -0.7
Cd40lgP27548 Ighv1-48-201ENSMUST00000191795 294 ntBASIC10.67□□□□□ -0.7
Cd40lgP27548 Gm38228-201ENSMUST00000193169 1293 ntBASIC10.67□□□□□ -0.7
Cd40lgP27548 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC10.67□□□□□ -0.7
Cd40lgP27548 Gm9797-202ENSMUST00000218003 294 ntBASIC10.67□□□□□ -0.7
Cd40lgP27548 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC10.67□□□□□ -0.7
Cd40lgP27548 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cd40lgP27548 Celf1-204ENSMUST00000111448 4432 ntAPPRIS ALT1 TSL 5 BASIC10.67□□□□□ -0.7
Cd40lgP27548 Pml-207ENSMUST00000135310 4413 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cd40lgP27548 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC10.67□□□□□ -0.7
Cd40lgP27548 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC10.67□□□□□ -0.7
Cd40lgP27548 AC154517.2-201ENSMUST00000220829 2458 ntBASIC10.67□□□□□ -0.7
Cd40lgP27548 Adgrl3-215ENSMUST00000120673 5178 ntAPPRIS ALT2 TSL 5 BASIC10.67□□□□□ -0.7
Cd40lgP27548 Armt1-201ENSMUST00000095893 2429 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cd40lgP27548 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cd40lgP27548 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Cd40lgP27548 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Cd40lgP27548 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cd40lgP27548 Gm45496-201ENSMUST00000209918 2917 ntBASIC10.67□□□□□ -0.7
Cd40lgP27548 Wwp2-201ENSMUST00000166615 4314 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cd40lgP27548 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC10.67□□□□□ -0.7
Cd40lgP27548 Zfp217-201ENSMUST00000063710 5685 ntAPPRIS P1 TSL 1 (best) BASIC10.67□□□□□ -0.7
Cd40lgP27548 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC10.66□□□□□ -0.7
Cd40lgP27548 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC10.66□□□□□ -0.7
Cd40lgP27548 Mff-209ENSMUST00000160972 1358 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Pitpnm2os2-203ENSMUST00000198466 2467 ntBASIC10.66□□□□□ -0.7
Cd40lgP27548 Rab3gap2-201ENSMUST00000069652 7052 ntAPPRIS P2 TSL 5 BASIC10.66□□□□□ -0.7
Cd40lgP27548 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC10.66□□□□□ -0.7
Cd40lgP27548 Gm8155-201ENSMUST00000216363 1612 ntBASIC10.66□□□□□ -0.7
Cd40lgP27548 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Unk-201ENSMUST00000021116 3735 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Aldh3b2-201ENSMUST00000143380 2141 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Pip5k1b-202ENSMUST00000112673 2387 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Ngfr-201ENSMUST00000000122 3446 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Gm5878-201ENSMUST00000113802 4643 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Setbp1-201ENSMUST00000025430 9953 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Cd40lgP27548 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Tiam2-201ENSMUST00000072156 6127 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Gm13035-201ENSMUST00000117496 342 ntBASIC10.66□□□□□ -0.7
Cd40lgP27548 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC10.66□□□□□ -0.7
Cd40lgP27548 Gm15207-201ENSMUST00000119259 442 ntBASIC10.66□□□□□ -0.7
Cd40lgP27548 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Gm13376-201ENSMUST00000128743 448 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 1110002L01Rik-203ENSMUST00000179637 586 ntTSL 5 BASIC10.66□□□□□ -0.7
Cd40lgP27548 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC10.66□□□□□ -0.7
Cd40lgP27548 Gm29539-201ENSMUST00000188031 758 ntTSL 3 BASIC10.66□□□□□ -0.7
Cd40lgP27548 Gm4482-201ENSMUST00000200876 742 ntBASIC10.66□□□□□ -0.7
Cd40lgP27548 Gm7848-201ENSMUST00000210739 718 ntBASIC10.66□□□□□ -0.7
Cd40lgP27548 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC10.66□□□□□ -0.7
Cd40lgP27548 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 AC122463.1-201ENSMUST00000214559 597 ntTSL 3 BASIC10.66□□□□□ -0.7
Cd40lgP27548 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Gm5537-201ENSMUST00000091117 1252 ntBASIC10.66□□□□□ -0.7
Cd40lgP27548 Cyb5b-201ENSMUST00000034400 4316 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Ptpn23-201ENSMUST00000040021 5346 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Cd40lgP27548 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Adamtsl3-204ENSMUST00000173828 2292 ntTSL 5 BASIC10.66□□□□□ -0.7
Cd40lgP27548 Prdm16-205ENSMUST00000105637 8595 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Prdm16-201ENSMUST00000030902 8598 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Eif5-213ENSMUST00000222388 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Mon2-201ENSMUST00000037557 5511 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Pdzd7-203ENSMUST00000169459 3903 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.7
Cd40lgP27548 Rbm47-205ENSMUST00000167950 4895 ntAPPRIS P3 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Loxhd1-202ENSMUST00000096547 6595 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Gm29480-201ENSMUST00000188589 1655 ntTSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Fgl2-201ENSMUST00000035799 3788 ntAPPRIS P1 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC10.66□□□□□ -0.7
Cd40lgP27548 Atp9b-201ENSMUST00000091790 5357 ntAPPRIS ALT2 TSL 5 BASIC10.66□□□□□ -0.7
Cd40lgP27548 Rnf144b-201ENSMUST00000068891 4640 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Gm6580-201ENSMUST00000117504 1357 ntBASIC10.65□□□□□ -0.7
Cd40lgP27548 Egfr-201ENSMUST00000020329 10208 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Cacna1e-207ENSMUST00000211821 6765 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
Cd40lgP27548 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
Cd40lgP27548 Crocc2-201ENSMUST00000138595 7132 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
Retrieved 100 of 76,532 protein–RNA pairs in 57.6 ms