Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 CT009536.2-201ENSMUST00000225370 665 ntBASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 AC136376.2-201ENSMUST00000228819 490 ntBASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 n-R5s211-201ENSMUST00000093689 119 ntBASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 Gm37849-201ENSMUST00000194722 1881 ntBASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 Prpf19-203ENSMUST00000179297 6035 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 Mmachc-201ENSMUST00000030453 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Sf3b1Q99NB9 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Gdap2-202ENSMUST00000106997 2014 ntTSL 2 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Gm11413-201ENSMUST00000155822 1461 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Cipc-208ENSMUST00000189246 1454 ntAPPRIS P2 TSL 2 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Bpi-201ENSMUST00000065039 1926 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Gm26857-201ENSMUST00000181580 3347 ntTSL 5 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Syt15-202ENSMUST00000119693 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Gm6655-201ENSMUST00000201932 1309 ntBASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Sln-201ENSMUST00000048485 1318 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Gm37859-201ENSMUST00000195529 2173 ntBASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Otx2-202ENSMUST00000119070 1708 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Kalrn-211ENSMUST00000114966 3857 ntTSL 5 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Gm10479-201ENSMUST00000101568 318 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Igf1-205ENSMUST00000121952 798 ntTSL 3 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Gm21972-201ENSMUST00000135197 776 ntAPPRIS P1 TSL 3 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Dpf3-206ENSMUST00000177959 1298 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Gm2762-206ENSMUST00000202502 335 ntTSL 3 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Gm2762-208ENSMUST00000202976 568 ntTSL 3 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Fxyd4-202ENSMUST00000203066 522 ntTSL 3 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Gm45594-201ENSMUST00000211717 241 ntBASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 1700011B04Rik-204ENSMUST00000220859 422 ntTSL 5 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 CT025551.1-201ENSMUST00000223996 692 ntBASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Atp5h-201ENSMUST00000043931 625 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Gm9962-201ENSMUST00000085241 321 ntTSL 5 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Rnf225-201ENSMUST00000045870 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Sorcs1-203ENSMUST00000164039 7241 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Sec16a-202ENSMUST00000114082 8797 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Gm38089-201ENSMUST00000193585 1514 ntBASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Prkd1-201ENSMUST00000002765 3653 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Sf3b1Q99NB9 Pcif1-201ENSMUST00000041643 5772 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 AC154639.1-201ENSMUST00000224393 2849 ntBASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Pdxdc1-201ENSMUST00000023361 4228 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 BC017643-201ENSMUST00000038709 2417 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Nphs1os-201ENSMUST00000152625 1339 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Rbms3-201ENSMUST00000044901 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Cacnb2-203ENSMUST00000114723 3945 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Clic3-201ENSMUST00000102918 791 ntAPPRIS ALT1 TSL 3 BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Gm11700-201ENSMUST00000119409 403 ntBASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Gm28037-201ENSMUST00000122365 611 ntTSL 3 BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Treml4-202ENSMUST00000125426 992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Gm14154-201ENSMUST00000142642 579 ntTSL 3 BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Rwdd2a-202ENSMUST00000179212 1130 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 AA545190-201ENSMUST00000203495 1053 ntTSL 2 BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Gm5996-201ENSMUST00000211110 718 ntBASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 CT573047.1-201ENSMUST00000223652 851 ntBASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Nop10-201ENSMUST00000028553 1109 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Apoc4-201ENSMUST00000003071 538 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Omt2b-201ENSMUST00000043734 735 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Sst-201ENSMUST00000004480 599 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Trappc5-202ENSMUST00000207787 4411 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
Sf3b1Q99NB9 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 111 ms