Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Gm9102-201ENSMUST00000219250 465 ntBASIC14.88□□□□□ -0.03
Trim28Q62318 Krtap4-1-201ENSMUST00000081007 1015 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Trim28Q62318 Rhox3e-201ENSMUST00000081327 648 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Trim28Q62318 Rhox3a2-201ENSMUST00000096459 828 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim28Q62318 Nek5-202ENSMUST00000209656 2253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim28Q62318 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim28Q62318 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim28Q62318 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim28Q62318 9230110C19Rik-201ENSMUST00000065291 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim28Q62318 Rgs12-202ENSMUST00000087684 4713 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Trim28Q62318 F730043M19Rik-204ENSMUST00000148740 3312 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Trim28Q62318 Ccdc60-202ENSMUST00000086483 2168 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Trim28Q62318 Npr2-201ENSMUST00000030191 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim28Q62318 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim28Q62318 Pax5-205ENSMUST00000107827 1315 ntTSL 5 BASIC14.88□□□□□ -0.03
Trim28Q62318 Gsdmc2-202ENSMUST00000188404 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Trim28Q62318 Serpine1-202ENSMUST00000077523 2697 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Trim28Q62318 Rnf217-201ENSMUST00000081989 11013 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Trim28Q62318 Ccdc154-203ENSMUST00000182621 2402 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
Trim28Q62318 4933412E12Rik-201ENSMUST00000217853 1698 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Tfr2-207ENSMUST00000198866 3072 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Gm45743-201ENSMUST00000212701 2795 ntBASIC14.87□□□□□ -0.03
Trim28Q62318 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Acadsb-201ENSMUST00000015829 6081 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Gm4419-201ENSMUST00000180671 1729 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Herc4-208ENSMUST00000219577 3914 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Lexm-202ENSMUST00000106788 1569 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC14.87□□□□□ -0.03
Trim28Q62318 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Trim28Q62318 Acnat1-202ENSMUST00000107697 1446 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Trim28Q62318 Fbxo15-201ENSMUST00000037718 1437 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Meikin-201ENSMUST00000094193 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
Trim28Q62318 Hint1-202ENSMUST00000117710 580 ntTSL 2 BASIC14.87□□□□□ -0.03
Trim28Q62318 Rbmx2-ps-201ENSMUST00000119377 930 ntBASIC14.87□□□□□ -0.03
Trim28Q62318 Bach2os-202ENSMUST00000136149 687 ntTSL 2 BASIC14.87□□□□□ -0.03
Trim28Q62318 Gm28038-201ENSMUST00000143119 378 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Trim28Q62318 Prr33-202ENSMUST00000151580 399 ntTSL 5 BASIC14.87□□□□□ -0.03
Trim28Q62318 9330179D12Rik-201ENSMUST00000180569 1105 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Gm19013-201ENSMUST00000183895 1222 ntBASIC14.87□□□□□ -0.03
Trim28Q62318 Gm19014-201ENSMUST00000184828 1189 ntBASIC14.87□□□□□ -0.03
Trim28Q62318 Gm28836-201ENSMUST00000185842 633 ntTSL 2 BASIC14.87□□□□□ -0.03
Trim28Q62318 1700109G14Rik-202ENSMUST00000188538 754 ntTSL 3 BASIC14.87□□□□□ -0.03
Trim28Q62318 Gm43671-201ENSMUST00000200422 433 ntBASIC14.87□□□□□ -0.03
Trim28Q62318 Gm43912-201ENSMUST00000204352 538 ntBASIC14.87□□□□□ -0.03
Trim28Q62318 AC154184.3-201ENSMUST00000225620 1090 ntBASIC14.87□□□□□ -0.03
Trim28Q62318 Aimp1-201ENSMUST00000029663 1126 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Sapcd1-201ENSMUST00000040151 935 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Mib1-205ENSMUST00000165555 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Dck-201ENSMUST00000031311 3078 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Wdfy1-204ENSMUST00000113512 4551 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Wdfy1-205ENSMUST00000113513 4551 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Trim28Q62318 Wdfy1-206ENSMUST00000113514 4551 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Wdfy1-207ENSMUST00000113515 4551 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Gm6268-201ENSMUST00000115253 1453 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Trim28Q62318 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Erich3-203ENSMUST00000189969 3460 ntBASIC14.87□□□□□ -0.03
Trim28Q62318 Lmo3-206ENSMUST00000163024 1331 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Trim28Q62318 Kmt5b-205ENSMUST00000113972 4159 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Trim28Q62318 Fam214a-205ENSMUST00000215370 4205 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Trim28Q62318 Gm45776-201ENSMUST00000212366 1522 ntBASIC14.87□□□□□ -0.03
Trim28Q62318 Shtn1-202ENSMUST00000163821 3767 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim28Q62318 Grik4-202ENSMUST00000114865 5887 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim28Q62318 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim28Q62318 Pi16-202ENSMUST00000114701 2756 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim28Q62318 Etfbkmt-209ENSMUST00000179873 1576 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
Trim28Q62318 Acsl1-202ENSMUST00000110371 2100 ntTSL 5 BASIC14.86□□□□□ -0.03
Trim28Q62318 Acnat2-202ENSMUST00000107698 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim28Q62318 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim28Q62318 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim28Q62318 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim28Q62318 Gm25562-201ENSMUST00000104608 133 ntBASIC14.86□□□□□ -0.03
Trim28Q62318 Rmdn1-202ENSMUST00000108253 806 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim28Q62318 Vbp1-202ENSMUST00000114070 632 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim28Q62318 Il1rn-202ENSMUST00000114485 728 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim28Q62318 Gm12663-201ENSMUST00000118481 958 ntBASIC14.86□□□□□ -0.03
Trim28Q62318 Gm12129-201ENSMUST00000120104 1147 ntBASIC14.86□□□□□ -0.03
Trim28Q62318 Gm11728-201ENSMUST00000150628 660 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim28Q62318 Gm15996-201ENSMUST00000161925 762 ntTSL 5 BASIC14.86□□□□□ -0.03
Trim28Q62318 Clec7a-202ENSMUST00000184581 707 ntAPPRIS P2 TSL 3 BASIC14.86□□□□□ -0.03
Trim28Q62318 Gm28166-201ENSMUST00000187637 620 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim28Q62318 D3Ertd751e-215ENSMUST00000195882 680 ntAPPRIS P3 TSL 2 BASIC14.86□□□□□ -0.03
Trim28Q62318 Gm43634-201ENSMUST00000202671 675 ntTSL 3 BASIC14.86□□□□□ -0.03
Trim28Q62318 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim28Q62318 Cox6b1-204ENSMUST00000208838 354 ntTSL 3 BASIC14.86□□□□□ -0.03
Trim28Q62318 Park2-210ENSMUST00000218435 865 ntTSL 5 BASIC14.86□□□□□ -0.03
Trim28Q62318 AC148334.1-201ENSMUST00000220853 370 ntTSL 5 BASIC14.86□□□□□ -0.03
Trim28Q62318 Prss3-201ENSMUST00000096003 822 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim28Q62318 Tlr9-201ENSMUST00000062241 3478 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim28Q62318 Nynrin-202ENSMUST00000168479 7511 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Trim28Q62318 Ighg2b-202ENSMUST00000192188 2566 ntAPPRIS P5 BASIC14.86□□□□□ -0.03
Trim28Q62318 Zfp37-206ENSMUST00000222050 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim28Q62318 Gm43972-201ENSMUST00000181398 1467 ntBASIC14.86□□□□□ -0.03
Trim28Q62318 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Trim28Q62318 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Trim28Q62318 AC113282.1-201ENSMUST00000225278 1707 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 50.9 ms