Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm5148-203ENSMUST00000108105 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Gm9095-201ENSMUST00000117607 881 ntBASIC14.9□□□□□ -0.02
Col18a1P39061 Gm11235-201ENSMUST00000117763 333 ntBASIC14.9□□□□□ -0.02
Col18a1P39061 Gm9097-201ENSMUST00000120514 880 ntBASIC14.9□□□□□ -0.02
Col18a1P39061 Smt3h2-ps2-201ENSMUST00000122370 288 ntBASIC14.9□□□□□ -0.02
Col18a1P39061 Rps18-206ENSMUST00000174609 527 ntTSL 2 BASIC14.9□□□□□ -0.02
Col18a1P39061 Mir6396-201ENSMUST00000183603 111 ntBASIC14.9□□□□□ -0.02
Col18a1P39061 Gm45060-201ENSMUST00000203293 593 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 3830406C13Rik-213ENSMUST00000225294 1191 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
Col18a1P39061 Gm25483-201ENSMUST00000083224 227 ntBASIC14.9□□□□□ -0.02
Col18a1P39061 Gm38194-201ENSMUST00000194529 2211 ntBASIC14.9□□□□□ -0.02
Col18a1P39061 Rffl-201ENSMUST00000021036 1719 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Zfp37-206ENSMUST00000222050 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Afap1l1-201ENSMUST00000120472 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Spred2-202ENSMUST00000093299 4449 ntTSL 5 BASIC14.9□□□□□ -0.02
Col18a1P39061 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Drc1-201ENSMUST00000101448 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Sp6-202ENSMUST00000107622 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Ppnr-201ENSMUST00000190974 3525 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Psmf1-202ENSMUST00000109869 1384 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Col18a1P39061 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Psmd9-201ENSMUST00000100729 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Il15ra-203ENSMUST00000114831 882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Gm13758-201ENSMUST00000118699 743 ntBASIC14.9□□□□□ -0.02
Col18a1P39061 Rpl17-ps1-201ENSMUST00000119156 552 ntBASIC14.9□□□□□ -0.02
Col18a1P39061 Gm14152-201ENSMUST00000127020 1073 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Gm15929-201ENSMUST00000138926 1161 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Gm5174-201ENSMUST00000171131 1423 ntBASIC14.9□□□□□ -0.02
Col18a1P39061 Vmn2r-ps125-201ENSMUST00000176234 931 ntBASIC14.9□□□□□ -0.02
Col18a1P39061 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Col18a1P39061 Gm26532-201ENSMUST00000180630 690 ntBASIC14.9□□□□□ -0.02
Col18a1P39061 Gm6946-201ENSMUST00000182237 987 ntBASIC14.9□□□□□ -0.02
Col18a1P39061 Ighv5-1-201ENSMUST00000193324 353 ntBASIC14.9□□□□□ -0.02
Col18a1P39061 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Zfp772-201ENSMUST00000074455 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Gm5507-201ENSMUST00000091897 1008 ntBASIC14.9□□□□□ -0.02
Col18a1P39061 Gm5148-202ENSMUST00000099128 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 1700022A22Rik-202ENSMUST00000187130 1458 ntTSL 5 BASIC14.9□□□□□ -0.02
Col18a1P39061 Map3k5-202ENSMUST00000120259 4289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Hrc-201ENSMUST00000085351 2411 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Col18a1P39061 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Col18a1P39061 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Col18a1P39061 Cd247-205ENSMUST00000161559 1816 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Col18a1P39061 Scpep1-201ENSMUST00000000287 2097 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col18a1P39061 Ltc4s-201ENSMUST00000101265 480 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Col18a1P39061 Snora68-201ENSMUST00000104375 131 ntBASIC14.89□□□□□ -0.03
Col18a1P39061 Mtcp1-202ENSMUST00000114081 980 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Col18a1P39061 Sgcg-202ENSMUST00000121148 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col18a1P39061 Gm14145-201ENSMUST00000133385 508 ntTSL 3 BASIC14.89□□□□□ -0.03
Col18a1P39061 Gm14146-201ENSMUST00000155885 508 ntTSL 5 BASIC14.89□□□□□ -0.03
Col18a1P39061 Gm23479-201ENSMUST00000158876 122 ntBASIC14.89□□□□□ -0.03
Col18a1P39061 Gm17797-201ENSMUST00000182175 997 ntBASIC14.89□□□□□ -0.03
Col18a1P39061 Gm9523-201ENSMUST00000199146 1159 ntBASIC14.89□□□□□ -0.03
Col18a1P39061 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col18a1P39061 Stxbp6-201ENSMUST00000053768 4553 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Col18a1P39061 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col18a1P39061 Itpripl2-201ENSMUST00000178344 6865 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Col18a1P39061 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Col18a1P39061 Utp23-203ENSMUST00000137116 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col18a1P39061 Slc13a5-205ENSMUST00000208056 3111 ntTSL 5 BASIC14.89□□□□□ -0.03
Col18a1P39061 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Col18a1P39061 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col18a1P39061 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Col18a1P39061 Slc10a4-202ENSMUST00000201304 1419 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col18a1P39061 Abi1-201ENSMUST00000078977 3027 ntAPPRIS ALT1 TSL 5 BASIC14.88□□□□□ -0.03
Col18a1P39061 Ifna6-201ENSMUST00000105146 570 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Col18a1P39061 Gm14227-201ENSMUST00000119431 629 ntBASIC14.88□□□□□ -0.03
Col18a1P39061 Gm16322-202ENSMUST00000141275 700 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col18a1P39061 Gm15419-201ENSMUST00000148654 743 ntTSL 3 BASIC14.88□□□□□ -0.03
Col18a1P39061 Bud31-203ENSMUST00000160075 928 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
Col18a1P39061 Gm5766-202ENSMUST00000161633 799 ntBASIC14.88□□□□□ -0.03
Col18a1P39061 Ifna11-201ENSMUST00000170428 573 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Col18a1P39061 Platr17-201ENSMUST00000172817 807 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col18a1P39061 Gm21963-201ENSMUST00000179519 330 ntBASIC14.88□□□□□ -0.03
Col18a1P39061 Psmb6-ps2-201ENSMUST00000187074 705 ntBASIC14.88□□□□□ -0.03
Col18a1P39061 Gm42617-201ENSMUST00000197640 1229 ntBASIC14.88□□□□□ -0.03
Col18a1P39061 Gm31378-201ENSMUST00000213538 267 ntTSL 5 BASIC14.88□□□□□ -0.03
Col18a1P39061 AC130217.1-201ENSMUST00000224146 909 ntBASIC14.88□□□□□ -0.03
Col18a1P39061 AC114585.2-201ENSMUST00000227693 486 ntBASIC14.88□□□□□ -0.03
Col18a1P39061 Adig-201ENSMUST00000059889 632 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col18a1P39061 Ifna1-201ENSMUST00000094972 570 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Col18a1P39061 Alox5-202ENSMUST00000164547 1854 ntTSL 5 BASIC14.88□□□□□ -0.03
Col18a1P39061 Diaph1-202ENSMUST00000080033 4378 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col18a1P39061 Phf12-201ENSMUST00000049167 4410 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col18a1P39061 Sh3bp2-202ENSMUST00000101316 3031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col18a1P39061 Atp6v0e2-201ENSMUST00000040361 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col18a1P39061 Kif7-204ENSMUST00000184137 4093 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
Col18a1P39061 Nrg1-206ENSMUST00000208205 2645 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Col18a1P39061 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col18a1P39061 Sdcbp-204ENSMUST00000108374 1803 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col18a1P39061 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col18a1P39061 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col18a1P39061 Tgm1-201ENSMUST00000002389 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col18a1P39061 Map4k4-201ENSMUST00000163854 5782 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 36.4 ms