Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Syne3-202ENSMUST00000095439 3357 ntAPPRIS P4 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Dysf-212ENSMUST00000203695 6504 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Lhx9-204ENSMUST00000112026 2065 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Man2b2-201ENSMUST00000031002 3330 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 AC153506.1-201ENSMUST00000218768 2915 ntBASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Gm23912-201ENSMUST00000104687 87 ntBASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Cstl1-201ENSMUST00000109952 629 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Cd27-203ENSMUST00000112282 588 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Gm13611-201ENSMUST00000118269 318 ntBASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Gm12266-201ENSMUST00000120311 962 ntBASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Uxt-202ENSMUST00000123836 875 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Gm13944-201ENSMUST00000126572 721 ntTSL 2 BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Tmem116-209ENSMUST00000156080 1184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Gm37666-201ENSMUST00000194110 866 ntBASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Gm29707-202ENSMUST00000198744 659 ntTSL 3 BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Gm17931-201ENSMUST00000208132 634 ntBASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 AC107638.1-201ENSMUST00000213690 1061 ntBASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Dnajc4-201ENSMUST00000025915 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 1700028J19Rik-201ENSMUST00000037220 1245 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Rpl34-202ENSMUST00000079085 480 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Rasgrp4-210ENSMUST00000203070 3008 ntTSL 5 BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 D030068K23Rik-201ENSMUST00000180382 2617 ntTSL 2 BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Iqsec2-201ENSMUST00000096275 5252 ntAPPRIS P3 TSL 2 BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Irx3os-203ENSMUST00000133528 1354 ntTSL 5 BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Ctdspl2-201ENSMUST00000036647 5053 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 F830115B05Rik-201ENSMUST00000197638 1894 ntBASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Fli1-201ENSMUST00000016231 3318 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Gm9962-202ENSMUST00000186595 1417 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Brat1-201ENSMUST00000041588 3333 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Hs6st2-201ENSMUST00000088172 4318 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Ric8a-201ENSMUST00000026558 3406 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Pou6f1-201ENSMUST00000058274 2523 ntTSL 2 BASIC11.76□□□□□ -0.53
Sh3rf1Q69ZI1 Pofut1-201ENSMUST00000049863 5600 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Poldip3-202ENSMUST00000100375 3157 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Gm44755-201ENSMUST00000207830 2102 ntBASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Pigb-206ENSMUST00000184035 3221 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Fmnl1-202ENSMUST00000042286 3806 ntAPPRIS P4 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Sdccag8-201ENSMUST00000027785 2776 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Atl2-202ENSMUST00000112437 3371 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Ptpru-202ENSMUST00000097860 3365 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Vstm2a-202ENSMUST00000109647 1745 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Nos3-201ENSMUST00000030834 4132 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Pyurf-201ENSMUST00000053386 3573 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Wdr13-201ENSMUST00000033506 4183 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Plagl2-201ENSMUST00000056924 5485 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 n-R5s14-201ENSMUST00000122688 107 ntBASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Magohb-205ENSMUST00000173837 897 ntTSL 5 BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 G530012D18Rik-201ENSMUST00000178024 420 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Lsm10-203ENSMUST00000179323 808 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 1700027J07Rik-202ENSMUST00000215747 1060 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Cngb1-202ENSMUST00000119870 6189 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Ptgr2-207ENSMUST00000146377 2073 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Mapkap1-209ENSMUST00000147337 3111 ntAPPRIS P2 TSL 1 (best) BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Gm29358-202ENSMUST00000187941 3227 ntBASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
Sh3rf1Q69ZI1 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Mfsd4b5-202ENSMUST00000073618 2978 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Ctcfl-202ENSMUST00000179693 3174 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Stkld1-201ENSMUST00000055406 2169 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Zfp536-202ENSMUST00000175941 4423 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 4931415C17Rik-202ENSMUST00000131064 2255 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Vwa1-201ENSMUST00000042196 3623 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Armc1-201ENSMUST00000029125 3673 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Tspan18-202ENSMUST00000111265 3751 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Tmc5-202ENSMUST00000098088 3774 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Crem-233ENSMUST00000154135 2530 ntTSL 5 BASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Bnip3l-ps-201ENSMUST00000101577 657 ntBASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Gm24934-201ENSMUST00000103764 111 ntBASIC11.74□□□□□ -0.53
Sh3rf1Q69ZI1 Pax5-204ENSMUST00000107826 1228 ntTSL 5 BASIC11.74□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 56.7 ms