Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cux1P53564 Arhgef40-201ENSMUST00000093813 5621 ntAPPRIS P4 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cux1P53564 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Cux1P53564 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cux1P53564 Gm29295-201ENSMUST00000190004 1371 ntTSL 5 BASIC17.53■□□□□ 0.4
Cux1P53564 Gm42970-201ENSMUST00000196407 1352 ntBASIC17.53■□□□□ 0.4
Cux1P53564 Umod-206ENSMUST00000209095 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cux1P53564 Eef1akmt4-202ENSMUST00000119224 1464 ntTSL 2 BASIC17.53■□□□□ 0.4
Cux1P53564 Treml4-201ENSMUST00000059873 1744 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Cux1P53564 Kif9-204ENSMUST00000198043 2233 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Cux1P53564 Specc1-202ENSMUST00000092415 6797 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
Cux1P53564 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Cux1P53564 Ighv1-58-201ENSMUST00000103529 351 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Cux1P53564 Trub2-203ENSMUST00000113807 1035 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Cux1P53564 Gm5944-201ENSMUST00000118182 1001 ntBASIC17.52■□□□□ 0.4
Cux1P53564 Gm20443-201ENSMUST00000173840 735 ntTSL 3 BASIC17.52■□□□□ 0.4
Cux1P53564 Gm17190-202ENSMUST00000185178 1074 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Cux1P53564 Gm37229-201ENSMUST00000191643 732 ntTSL 3 BASIC17.52■□□□□ 0.4
Cux1P53564 Gm6331-201ENSMUST00000217890 450 ntBASIC17.52■□□□□ 0.4
Cux1P53564 Nkain2-205ENSMUST00000219125 1166 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Cux1P53564 Baz1b-201ENSMUST00000002825 6492 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cux1P53564 Dnajb1-202ENSMUST00000212300 2854 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Cux1P53564 Cplx3-201ENSMUST00000045068 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cux1P53564 Etfbkmt-209ENSMUST00000179873 1576 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
Cux1P53564 Lysmd1-201ENSMUST00000066386 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cux1P53564 Kalrn-210ENSMUST00000114964 2693 ntTSL 5 BASIC17.52■□□□□ 0.4
Cux1P53564 Samhd1-203ENSMUST00000109549 3245 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cux1P53564 Fgfr3-215ENSMUST00000202138 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cux1P53564 Spr-ps1-203ENSMUST00000187705 2892 ntBASIC17.52■□□□□ 0.4
Cux1P53564 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Cux1P53564 Nupl1-206ENSMUST00000225111 2936 ntBASIC17.52■□□□□ 0.39
Cux1P53564 Polr1e-203ENSMUST00000107814 1470 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cux1P53564 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cux1P53564 Pros1-201ENSMUST00000023629 3303 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cux1P53564 Zbtb43-203ENSMUST00000113156 1828 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Cux1P53564 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Cux1P53564 Tspan32os-201ENSMUST00000131740 975 ntTSL 2 BASIC17.52■□□□□ 0.39
Cux1P53564 1700099I09Rik-201ENSMUST00000167834 769 ntTSL 2 BASIC17.52■□□□□ 0.39
Cux1P53564 Gm27211-201ENSMUST00000183507 631 ntTSL 5 BASIC17.52■□□□□ 0.39
Cux1P53564 Gm27440-201ENSMUST00000184785 107 ntBASIC17.52■□□□□ 0.39
Cux1P53564 1700009J07Rik-202ENSMUST00000185309 920 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
Cux1P53564 Nps-202ENSMUST00000210697 1082 ntTSL 5 BASIC17.52■□□□□ 0.39
Cux1P53564 Gm6564-201ENSMUST00000075377 619 ntBASIC17.52■□□□□ 0.39
Cux1P53564 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cux1P53564 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cux1P53564 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cux1P53564 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Cux1P53564 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Cux1P53564 Zswim8-204ENSMUST00000223840 5674 ntAPPRIS ALT2 BASIC17.51■□□□□ 0.39
Cux1P53564 Rtn4-205ENSMUST00000102843 4618 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Cux1P53564 Fbln7-202ENSMUST00000110324 3228 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Cux1P53564 AC155245.1-201ENSMUST00000222266 1804 ntBASIC17.51■□□□□ 0.39
Cux1P53564 Evc2-201ENSMUST00000056365 4091 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cux1P53564 Prr16-201ENSMUST00000116639 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cux1P53564 Fxyd5-212ENSMUST00000162733 2998 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Cux1P53564 Prrt3-203ENSMUST00000204268 3741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cux1P53564 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cux1P53564 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
Cux1P53564 Ppp1r18-202ENSMUST00000122899 2743 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cux1P53564 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
Cux1P53564 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC17.51■□□□□ 0.39
Cux1P53564 Isg20-203ENSMUST00000120331 845 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cux1P53564 Mid1-ps1-201ENSMUST00000167967 1248 ntBASIC17.51■□□□□ 0.39
Cux1P53564 Gm6677-201ENSMUST00000195100 441 ntBASIC17.51■□□□□ 0.39
Cux1P53564 Nme6-214ENSMUST00000200468 865 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
Cux1P53564 Gm7939-201ENSMUST00000201233 1050 ntBASIC17.51■□□□□ 0.39
Cux1P53564 BC080696-201ENSMUST00000202858 1218 ntBASIC17.51■□□□□ 0.39
Cux1P53564 AC162938.2-202ENSMUST00000215497 722 ntTSL 5 BASIC17.51■□□□□ 0.39
Cux1P53564 Timm9-210ENSMUST00000221892 734 ntTSL 5 BASIC17.51■□□□□ 0.39
Cux1P53564 CT030135.2-201ENSMUST00000225255 893 ntBASIC17.51■□□□□ 0.39
Cux1P53564 Gm9791-201ENSMUST00000060997 447 ntBASIC17.51■□□□□ 0.39
Cux1P53564 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Cux1P53564 Asph-207ENSMUST00000108333 2652 ntTSL 5 BASIC17.51■□□□□ 0.39
Cux1P53564 Mau2-201ENSMUST00000050561 5369 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Cux1P53564 Il1f5-205ENSMUST00000147885 1392 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Cux1P53564 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Cux1P53564 Dusp22-202ENSMUST00000095914 3015 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
Cux1P53564 Zfp37-206ENSMUST00000222050 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Cux1P53564 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Cux1P53564 Gm44755-201ENSMUST00000207830 2102 ntBASIC17.5■□□□□ 0.39
Cux1P53564 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
Cux1P53564 Ep400-202ENSMUST00000112433 3399 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Cux1P53564 AC154639.1-201ENSMUST00000224393 2849 ntBASIC17.5■□□□□ 0.39
Cux1P53564 Stx5a-213ENSMUST00000176381 2251 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Cux1P53564 Paupar-201ENSMUST00000194826 3482 ntBASIC17.5■□□□□ 0.39
Cux1P53564 Pex5l-203ENSMUST00000108221 1187 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Cux1P53564 Camk2a-205ENSMUST00000115297 499 ntTSL 2 BASIC17.5■□□□□ 0.39
Cux1P53564 Gm1826-201ENSMUST00000118646 1162 ntBASIC17.5■□□□□ 0.39
Cux1P53564 Gm12986-201ENSMUST00000119037 967 ntBASIC17.5■□□□□ 0.39
Cux1P53564 Ndufb5-204ENSMUST00000127477 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Cux1P53564 Aamdc-206ENSMUST00000136757 789 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
Cux1P53564 2610016A17Rik-201ENSMUST00000185211 474 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Cux1P53564 Gm19918-201ENSMUST00000194858 400 ntBASIC17.5■□□□□ 0.39
Cux1P53564 Olfr1358-201ENSMUST00000204477 1064 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Cux1P53564 Ppm1a-205ENSMUST00000222896 1103 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Cux1P53564 AC154759.1-201ENSMUST00000224137 1159 ntBASIC17.5■□□□□ 0.39
Cux1P53564 AC129975.1-201ENSMUST00000224816 592 ntBASIC17.5■□□□□ 0.39
Cux1P53564 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Cux1P53564 Olfr56-203ENSMUST00000179282 1935 ntTSL 5 BASIC17.5■□□□□ 0.39
Cux1P53564 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 43.7 ms