Protein–RNA interactions for Protein: Q9EQH3

Vps35, Vacuolar protein sorting-associated protein 35, mousemouse

Known RBP Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps35Q9EQH3 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Vps35Q9EQH3 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Vps35Q9EQH3 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Vps35Q9EQH3 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vps35Q9EQH3 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC20.39■□□□□ 0.85
Vps35Q9EQH3 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vps35Q9EQH3 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC20.39■□□□□ 0.85
Vps35Q9EQH3 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC20.39■□□□□ 0.85
Vps35Q9EQH3 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC20.39■□□□□ 0.85
Vps35Q9EQH3 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
Vps35Q9EQH3 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC20.39■□□□□ 0.85
Vps35Q9EQH3 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vps35Q9EQH3 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vps35Q9EQH3 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps35Q9EQH3 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Vps35Q9EQH3 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Vps35Q9EQH3 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps35Q9EQH3 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps35Q9EQH3 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps35Q9EQH3 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Vps35Q9EQH3 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vps35Q9EQH3 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Vps35Q9EQH3 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Vps35Q9EQH3 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Vps35Q9EQH3 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
Vps35Q9EQH3 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC20.38■□□□□ 0.85
Vps35Q9EQH3 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps35Q9EQH3 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps35Q9EQH3 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps35Q9EQH3 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps35Q9EQH3 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
Vps35Q9EQH3 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Vps35Q9EQH3 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps35Q9EQH3 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps35Q9EQH3 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Vps35Q9EQH3 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC20.36■□□□□ 0.85
Vps35Q9EQH3 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps35Q9EQH3 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC20.36■□□□□ 0.85
Vps35Q9EQH3 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC20.36■□□□□ 0.85
Vps35Q9EQH3 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps35Q9EQH3 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps35Q9EQH3 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC20.36■□□□□ 0.85
Vps35Q9EQH3 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC20.36■□□□□ 0.85
Vps35Q9EQH3 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vps35Q9EQH3 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps35Q9EQH3 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps35Q9EQH3 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps35Q9EQH3 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Vps35Q9EQH3 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vps35Q9EQH3 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vps35Q9EQH3 Gm5913-201ENSMUST00000119397 1399 ntBASIC20.34■□□□□ 0.85
Vps35Q9EQH3 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC20.34■□□□□ 0.85
Vps35Q9EQH3 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Vps35Q9EQH3 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC20.34■□□□□ 0.85
Vps35Q9EQH3 Gm44949-201ENSMUST00000206423 1450 ntBASIC20.34■□□□□ 0.85
Vps35Q9EQH3 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vps35Q9EQH3 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vps35Q9EQH3 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Vps35Q9EQH3 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Vps35Q9EQH3 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.33■□□□□ 0.85
Vps35Q9EQH3 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Vps35Q9EQH3 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Vps35Q9EQH3 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
Vps35Q9EQH3 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Vps35Q9EQH3 Bex4-201ENSMUST00000116527 837 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Vps35Q9EQH3 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC20.33■□□□□ 0.85
Vps35Q9EQH3 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC20.33■□□□□ 0.85
Vps35Q9EQH3 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Vps35Q9EQH3 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Vps35Q9EQH3 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
Vps35Q9EQH3 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Vps35Q9EQH3 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps35Q9EQH3 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC20.32■□□□□ 0.84
Vps35Q9EQH3 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps35Q9EQH3 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Vps35Q9EQH3 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Vps35Q9EQH3 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Vps35Q9EQH3 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
Vps35Q9EQH3 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps35Q9EQH3 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps35Q9EQH3 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps35Q9EQH3 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC20.31■□□□□ 0.84
Vps35Q9EQH3 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC20.31■□□□□ 0.84
Vps35Q9EQH3 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC20.31■□□□□ 0.84
Vps35Q9EQH3 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC20.31■□□□□ 0.84
Vps35Q9EQH3 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps35Q9EQH3 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps35Q9EQH3 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps35Q9EQH3 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vps35Q9EQH3 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vps35Q9EQH3 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC20.3■□□□□ 0.84
Vps35Q9EQH3 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vps35Q9EQH3 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vps35Q9EQH3 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
Vps35Q9EQH3 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Vps35Q9EQH3 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Vps35Q9EQH3 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vps35Q9EQH3 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vps35Q9EQH3 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Vps35Q9EQH3 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms