Protein–RNA interactions for Protein: Q9DCB1

Hmgn3, High mobility group nucleosome-binding domain-containing protein 3, mousemouse

Predictions only

Length 99 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgn3Q9DCB1 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hmgn3Q9DCB1 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgn3Q9DCB1 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgn3Q9DCB1 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgn3Q9DCB1 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgn3Q9DCB1 AC167019.3-201ENSMUST00000228225 1266 ntBASIC19.19■□□□□ 0.66
Hmgn3Q9DCB1 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgn3Q9DCB1 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgn3Q9DCB1 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgn3Q9DCB1 Gm37035-201ENSMUST00000194809 2148 ntBASIC19.19■□□□□ 0.66
Hmgn3Q9DCB1 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgn3Q9DCB1 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hmgn3Q9DCB1 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hmgn3Q9DCB1 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hmgn3Q9DCB1 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hmgn3Q9DCB1 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC19.18■□□□□ 0.66
Hmgn3Q9DCB1 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hmgn3Q9DCB1 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC19.17■□□□□ 0.66
Hmgn3Q9DCB1 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
Hmgn3Q9DCB1 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hmgn3Q9DCB1 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hmgn3Q9DCB1 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC19.17■□□□□ 0.66
Hmgn3Q9DCB1 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Hmgn3Q9DCB1 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hmgn3Q9DCB1 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hmgn3Q9DCB1 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hmgn3Q9DCB1 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hmgn3Q9DCB1 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC19.16■□□□□ 0.66
Hmgn3Q9DCB1 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hmgn3Q9DCB1 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Hmgn3Q9DCB1 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Hmgn3Q9DCB1 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Hmgn3Q9DCB1 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Hmgn3Q9DCB1 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Hmgn3Q9DCB1 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Hmgn3Q9DCB1 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
Hmgn3Q9DCB1 AC158990.1-201ENSMUST00000221450 2016 ntBASIC19.15■□□□□ 0.66
Hmgn3Q9DCB1 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Hmgn3Q9DCB1 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Hmgn3Q9DCB1 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
Hmgn3Q9DCB1 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Hmgn3Q9DCB1 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgn3Q9DCB1 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgn3Q9DCB1 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgn3Q9DCB1 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgn3Q9DCB1 Ttc9b-201ENSMUST00000008088 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgn3Q9DCB1 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgn3Q9DCB1 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgn3Q9DCB1 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Hmgn3Q9DCB1 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgn3Q9DCB1 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Hmgn3Q9DCB1 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgn3Q9DCB1 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Hmgn3Q9DCB1 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Hmgn3Q9DCB1 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Hmgn3Q9DCB1 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Hmgn3Q9DCB1 AC117769.4-201ENSMUST00000225679 685 ntBASIC19.13■□□□□ 0.65
Hmgn3Q9DCB1 Pkd1-207ENSMUST00000228550 1050 ntBASIC19.13■□□□□ 0.65
Hmgn3Q9DCB1 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
Hmgn3Q9DCB1 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Hmgn3Q9DCB1 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Hmgn3Q9DCB1 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Hmgn3Q9DCB1 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
Hmgn3Q9DCB1 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
Hmgn3Q9DCB1 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Hmgn3Q9DCB1 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Hmgn3Q9DCB1 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Hmgn3Q9DCB1 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Hmgn3Q9DCB1 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC19.12■□□□□ 0.65
Hmgn3Q9DCB1 AC116713.1-201ENSMUST00000215074 430 ntBASIC19.12■□□□□ 0.65
Hmgn3Q9DCB1 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Hmgn3Q9DCB1 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Hmgn3Q9DCB1 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Hmgn3Q9DCB1 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Hmgn3Q9DCB1 Gm44428-201ENSMUST00000204474 874 ntBASIC19.11■□□□□ 0.65
Hmgn3Q9DCB1 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
Hmgn3Q9DCB1 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Hmgn3Q9DCB1 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Hmgn3Q9DCB1 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Hmgn3Q9DCB1 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC19.1■□□□□ 0.65
Hmgn3Q9DCB1 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Hmgn3Q9DCB1 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC19.1■□□□□ 0.65
Hmgn3Q9DCB1 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Hmgn3Q9DCB1 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Hmgn3Q9DCB1 Mex3d-201ENSMUST00000105350 3266 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Hmgn3Q9DCB1 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Hmgn3Q9DCB1 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
Hmgn3Q9DCB1 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Hmgn3Q9DCB1 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
Hmgn3Q9DCB1 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Hmgn3Q9DCB1 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Hmgn3Q9DCB1 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
Hmgn3Q9DCB1 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Hmgn3Q9DCB1 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Hmgn3Q9DCB1 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Hmgn3Q9DCB1 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Hmgn3Q9DCB1 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Hmgn3Q9DCB1 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC19.08■□□□□ 0.64
Hmgn3Q9DCB1 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC19.08■□□□□ 0.64
Hmgn3Q9DCB1 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 15.2 ms