Protein–RNA interactions for Protein: Q8K445

Clrn1, Clarin-1, mousemouse

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn1Q8K445 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Clrn1Q8K445 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clrn1Q8K445 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Clrn1Q8K445 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Clrn1Q8K445 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Clrn1Q8K445 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC19.27■□□□□ 0.68
Clrn1Q8K445 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC19.27■□□□□ 0.68
Clrn1Q8K445 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Clrn1Q8K445 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Clrn1Q8K445 Gm14117-201ENSMUST00000122417 843 ntBASIC19.26■□□□□ 0.67
Clrn1Q8K445 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clrn1Q8K445 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Clrn1Q8K445 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clrn1Q8K445 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC19.26■□□□□ 0.67
Clrn1Q8K445 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clrn1Q8K445 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clrn1Q8K445 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clrn1Q8K445 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Clrn1Q8K445 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Clrn1Q8K445 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Clrn1Q8K445 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clrn1Q8K445 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Clrn1Q8K445 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Clrn1Q8K445 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Clrn1Q8K445 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clrn1Q8K445 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clrn1Q8K445 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clrn1Q8K445 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clrn1Q8K445 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC19.24■□□□□ 0.67
Clrn1Q8K445 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clrn1Q8K445 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC19.24■□□□□ 0.67
Clrn1Q8K445 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC19.24■□□□□ 0.67
Clrn1Q8K445 Gm45102-201ENSMUST00000207427 857 ntBASIC19.24■□□□□ 0.67
Clrn1Q8K445 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Clrn1Q8K445 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clrn1Q8K445 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Clrn1Q8K445 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clrn1Q8K445 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clrn1Q8K445 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clrn1Q8K445 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Clrn1Q8K445 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC19.23■□□□□ 0.67
Clrn1Q8K445 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clrn1Q8K445 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Clrn1Q8K445 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
Clrn1Q8K445 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
Clrn1Q8K445 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Clrn1Q8K445 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clrn1Q8K445 Gm38160-201ENSMUST00000193090 2499 ntBASIC19.22■□□□□ 0.67
Clrn1Q8K445 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clrn1Q8K445 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clrn1Q8K445 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Clrn1Q8K445 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Clrn1Q8K445 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
Clrn1Q8K445 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clrn1Q8K445 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Clrn1Q8K445 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC19.21■□□□□ 0.67
Clrn1Q8K445 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clrn1Q8K445 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC19.21■□□□□ 0.67
Clrn1Q8K445 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC19.21■□□□□ 0.67
Clrn1Q8K445 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC19.21■□□□□ 0.67
Clrn1Q8K445 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clrn1Q8K445 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Clrn1Q8K445 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Clrn1Q8K445 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Clrn1Q8K445 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clrn1Q8K445 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clrn1Q8K445 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Clrn1Q8K445 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clrn1Q8K445 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clrn1Q8K445 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Clrn1Q8K445 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clrn1Q8K445 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
Clrn1Q8K445 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Clrn1Q8K445 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC19.2■□□□□ 0.66
Clrn1Q8K445 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Clrn1Q8K445 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Clrn1Q8K445 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC19.19■□□□□ 0.66
Clrn1Q8K445 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clrn1Q8K445 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clrn1Q8K445 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Clrn1Q8K445 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clrn1Q8K445 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clrn1Q8K445 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clrn1Q8K445 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clrn1Q8K445 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clrn1Q8K445 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clrn1Q8K445 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Clrn1Q8K445 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clrn1Q8K445 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clrn1Q8K445 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC19.18■□□□□ 0.66
Clrn1Q8K445 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Clrn1Q8K445 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clrn1Q8K445 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Clrn1Q8K445 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC19.17■□□□□ 0.66
Clrn1Q8K445 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clrn1Q8K445 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clrn1Q8K445 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clrn1Q8K445 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Clrn1Q8K445 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Clrn1Q8K445 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 14.5 ms