Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
Vps53Q8CCB4 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC23.69■■□□□ 1.38
Vps53Q8CCB4 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Vps53Q8CCB4 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Vps53Q8CCB4 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC23.69■■□□□ 1.38
Vps53Q8CCB4 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC23.69■■□□□ 1.38
Vps53Q8CCB4 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Vps53Q8CCB4 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Vps53Q8CCB4 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Vps53Q8CCB4 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Vps53Q8CCB4 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.69■■□□□ 1.38
Vps53Q8CCB4 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
Vps53Q8CCB4 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Vps53Q8CCB4 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Vps53Q8CCB4 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
Vps53Q8CCB4 Knstrn-202ENSMUST00000110842 925 ntAPPRIS ALT2 TSL 3 BASIC23.68■■□□□ 1.38
Vps53Q8CCB4 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC23.68■■□□□ 1.38
Vps53Q8CCB4 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
Vps53Q8CCB4 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC23.68■■□□□ 1.38
Vps53Q8CCB4 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
Vps53Q8CCB4 Setd4-201ENSMUST00000023669 1816 ntAPPRIS P1 TSL 5 BASIC23.68■■□□□ 1.38
Vps53Q8CCB4 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC23.67■■□□□ 1.38
Vps53Q8CCB4 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
Vps53Q8CCB4 Gm8093-201ENSMUST00000128935 1892 ntBASIC23.67■■□□□ 1.38
Vps53Q8CCB4 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC23.67■■□□□ 1.38
Vps53Q8CCB4 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
Vps53Q8CCB4 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC23.67■■□□□ 1.38
Vps53Q8CCB4 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
Vps53Q8CCB4 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC23.66■■□□□ 1.38
Vps53Q8CCB4 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Vps53Q8CCB4 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Vps53Q8CCB4 Gm38160-201ENSMUST00000193090 2499 ntBASIC23.66■■□□□ 1.38
Vps53Q8CCB4 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
Vps53Q8CCB4 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Vps53Q8CCB4 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Vps53Q8CCB4 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Vps53Q8CCB4 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
Vps53Q8CCB4 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
Vps53Q8CCB4 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
Vps53Q8CCB4 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
Vps53Q8CCB4 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.38
Vps53Q8CCB4 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
Vps53Q8CCB4 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC23.64■■□□□ 1.37
Vps53Q8CCB4 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
Vps53Q8CCB4 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
Vps53Q8CCB4 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC23.63■■□□□ 1.37
Vps53Q8CCB4 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Vps53Q8CCB4 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Vps53Q8CCB4 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC23.63■■□□□ 1.37
Vps53Q8CCB4 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
Vps53Q8CCB4 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
Vps53Q8CCB4 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC23.63■■□□□ 1.37
Vps53Q8CCB4 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Vps53Q8CCB4 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Vps53Q8CCB4 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
Vps53Q8CCB4 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC23.62■■□□□ 1.37
Vps53Q8CCB4 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Vps53Q8CCB4 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Vps53Q8CCB4 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Vps53Q8CCB4 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
Vps53Q8CCB4 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Vps53Q8CCB4 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC23.61■■□□□ 1.37
Vps53Q8CCB4 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Vps53Q8CCB4 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC23.61■■□□□ 1.37
Vps53Q8CCB4 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Vps53Q8CCB4 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
Vps53Q8CCB4 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Vps53Q8CCB4 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
Vps53Q8CCB4 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC23.6■■□□□ 1.37
Vps53Q8CCB4 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC23.6■■□□□ 1.37
Vps53Q8CCB4 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
Vps53Q8CCB4 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC23.6■■□□□ 1.37
Vps53Q8CCB4 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Vps53Q8CCB4 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Vps53Q8CCB4 Gm43006-201ENSMUST00000197702 1602 ntBASIC23.59■■□□□ 1.37
Vps53Q8CCB4 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
Vps53Q8CCB4 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC23.59■■□□□ 1.37
Vps53Q8CCB4 Gm27454-201ENSMUST00000185090 204 ntBASIC23.59■■□□□ 1.37
Vps53Q8CCB4 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
Vps53Q8CCB4 Kdm3b-204ENSMUST00000224715 2032 ntBASIC23.59■■□□□ 1.37
Vps53Q8CCB4 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Vps53Q8CCB4 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Vps53Q8CCB4 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
Vps53Q8CCB4 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC23.58■■□□□ 1.37
Vps53Q8CCB4 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC23.58■■□□□ 1.36
Vps53Q8CCB4 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC23.58■■□□□ 1.36
Vps53Q8CCB4 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
Vps53Q8CCB4 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Vps53Q8CCB4 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC23.57■■□□□ 1.36
Vps53Q8CCB4 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
Vps53Q8CCB4 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Vps53Q8CCB4 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
Vps53Q8CCB4 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Vps53Q8CCB4 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Vps53Q8CCB4 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
Vps53Q8CCB4 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC23.56■■□□□ 1.36
Vps53Q8CCB4 Golgb1-201ENSMUST00000023534 498 ntBASIC23.56■■□□□ 1.36
Vps53Q8CCB4 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
Vps53Q8CCB4 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
Vps53Q8CCB4 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms