Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Gm13241-201ENSMUST00000094493 780 ntBASIC22.77■■□□□ 1.24
Smarca1Q6PGB8 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Smarca1Q6PGB8 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC22.77■■□□□ 1.24
Smarca1Q6PGB8 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Smarca1Q6PGB8 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC22.77■■□□□ 1.24
Smarca1Q6PGB8 2010300C02Rik-203ENSMUST00000162875 4634 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
Smarca1Q6PGB8 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC22.77■■□□□ 1.24
Smarca1Q6PGB8 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC22.77■■□□□ 1.24
Smarca1Q6PGB8 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC22.77■■□□□ 1.23
Smarca1Q6PGB8 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Smarca1Q6PGB8 Ooep-201ENSMUST00000034900 2138 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Smarca1Q6PGB8 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC22.76■■□□□ 1.23
Smarca1Q6PGB8 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
Smarca1Q6PGB8 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
Smarca1Q6PGB8 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Smarca1Q6PGB8 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Smarca1Q6PGB8 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
Smarca1Q6PGB8 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC22.75■■□□□ 1.23
Smarca1Q6PGB8 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
Smarca1Q6PGB8 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
Smarca1Q6PGB8 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.74■■□□□ 1.23
Smarca1Q6PGB8 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC22.74■■□□□ 1.23
Smarca1Q6PGB8 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC22.74■■□□□ 1.23
Smarca1Q6PGB8 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC22.74■■□□□ 1.23
Smarca1Q6PGB8 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC22.74■■□□□ 1.23
Smarca1Q6PGB8 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Smarca1Q6PGB8 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC22.73■■□□□ 1.23
Smarca1Q6PGB8 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
Smarca1Q6PGB8 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
Smarca1Q6PGB8 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC22.73■■□□□ 1.23
Smarca1Q6PGB8 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC22.73■■□□□ 1.23
Smarca1Q6PGB8 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC22.73■■□□□ 1.23
Smarca1Q6PGB8 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC22.72■■□□□ 1.23
Smarca1Q6PGB8 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC22.72■■□□□ 1.23
Smarca1Q6PGB8 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
Smarca1Q6PGB8 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
Smarca1Q6PGB8 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
Smarca1Q6PGB8 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC22.72■■□□□ 1.23
Smarca1Q6PGB8 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Smarca1Q6PGB8 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Smarca1Q6PGB8 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Smarca1Q6PGB8 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Smarca1Q6PGB8 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
Smarca1Q6PGB8 Ankrd13d-201ENSMUST00000056888 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Smarca1Q6PGB8 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC22.71■■□□□ 1.23
Smarca1Q6PGB8 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Smarca1Q6PGB8 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Smarca1Q6PGB8 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
Smarca1Q6PGB8 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC22.7■■□□□ 1.22
Smarca1Q6PGB8 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC22.7■■□□□ 1.22
Smarca1Q6PGB8 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Smarca1Q6PGB8 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Smarca1Q6PGB8 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Smarca1Q6PGB8 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Smarca1Q6PGB8 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Smarca1Q6PGB8 Notumos-201ENSMUST00000151998 2659 ntBASIC22.69■■□□□ 1.22
Smarca1Q6PGB8 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Smarca1Q6PGB8 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Smarca1Q6PGB8 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
Smarca1Q6PGB8 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Smarca1Q6PGB8 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Smarca1Q6PGB8 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
Smarca1Q6PGB8 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Smarca1Q6PGB8 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Smarca1Q6PGB8 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Smarca1Q6PGB8 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC22.69■■□□□ 1.22
Smarca1Q6PGB8 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
Smarca1Q6PGB8 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Smarca1Q6PGB8 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Smarca1Q6PGB8 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Smarca1Q6PGB8 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC22.68■■□□□ 1.22
Smarca1Q6PGB8 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC22.68■■□□□ 1.22
Smarca1Q6PGB8 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Smarca1Q6PGB8 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Smarca1Q6PGB8 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Smarca1Q6PGB8 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC22.68■■□□□ 1.22
Smarca1Q6PGB8 Hccs-202ENSMUST00000112115 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Smarca1Q6PGB8 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Smarca1Q6PGB8 Gm43034-201ENSMUST00000198678 1364 ntBASIC22.67■■□□□ 1.22
Smarca1Q6PGB8 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Smarca1Q6PGB8 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Smarca1Q6PGB8 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC22.67■■□□□ 1.22
Smarca1Q6PGB8 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
Smarca1Q6PGB8 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Smarca1Q6PGB8 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC22.67■■□□□ 1.22
Smarca1Q6PGB8 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Smarca1Q6PGB8 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC22.66■■□□□ 1.22
Smarca1Q6PGB8 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Smarca1Q6PGB8 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Smarca1Q6PGB8 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Smarca1Q6PGB8 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Smarca1Q6PGB8 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Smarca1Q6PGB8 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
Smarca1Q6PGB8 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
Smarca1Q6PGB8 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Smarca1Q6PGB8 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Smarca1Q6PGB8 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
Smarca1Q6PGB8 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
Smarca1Q6PGB8 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC22.65■■□□□ 1.22
Smarca1Q6PGB8 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Retrieved 100 of 76,532 protein–RNA pairs in 81.8 ms