Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6d-4Q5R1I0 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6d-4Q5R1I0 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6d-4Q5R1I0 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6d-4Q5R1I0 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6d-4Q5R1I0 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6d-4Q5R1I0 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Trav6d-4Q5R1I0 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6d-4Q5R1I0 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6d-4Q5R1I0 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav6d-4Q5R1I0 Dmtn-209ENSMUST00000228295 2572 ntBASIC17.19■□□□□ 0.34
Trav6d-4Q5R1I0 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6d-4Q5R1I0 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6d-4Q5R1I0 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6d-4Q5R1I0 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6d-4Q5R1I0 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6d-4Q5R1I0 Appbp2os-202ENSMUST00000206972 447 ntBASIC17.19■□□□□ 0.34
Trav6d-4Q5R1I0 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC17.19■□□□□ 0.34
Trav6d-4Q5R1I0 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
Trav6d-4Q5R1I0 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6d-4Q5R1I0 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Trav6d-4Q5R1I0 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
Trav6d-4Q5R1I0 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav6d-4Q5R1I0 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trav6d-4Q5R1I0 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav6d-4Q5R1I0 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Trav6d-4Q5R1I0 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
Trav6d-4Q5R1I0 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav6d-4Q5R1I0 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Trav6d-4Q5R1I0 Slc35a2-201ENSMUST00000096514 1757 ntTSL 5 BASIC17.17■□□□□ 0.34
Trav6d-4Q5R1I0 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6d-4Q5R1I0 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6d-4Q5R1I0 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6d-4Q5R1I0 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6d-4Q5R1I0 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6d-4Q5R1I0 Gm12821-201ENSMUST00000120022 600 ntBASIC17.17■□□□□ 0.34
Trav6d-4Q5R1I0 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6d-4Q5R1I0 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6d-4Q5R1I0 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC17.17■□□□□ 0.34
Trav6d-4Q5R1I0 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6d-4Q5R1I0 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Trav6d-4Q5R1I0 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Trav6d-4Q5R1I0 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6d-4Q5R1I0 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6d-4Q5R1I0 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Trav6d-4Q5R1I0 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav6d-4Q5R1I0 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav6d-4Q5R1I0 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav6d-4Q5R1I0 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
Trav6d-4Q5R1I0 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC17.16■□□□□ 0.34
Trav6d-4Q5R1I0 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav6d-4Q5R1I0 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Trav6d-4Q5R1I0 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Trav6d-4Q5R1I0 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Trav6d-4Q5R1I0 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Trav6d-4Q5R1I0 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Trav6d-4Q5R1I0 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6d-4Q5R1I0 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC17.15■□□□□ 0.34
Trav6d-4Q5R1I0 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6d-4Q5R1I0 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC17.15■□□□□ 0.34
Trav6d-4Q5R1I0 Gm15039-201ENSMUST00000118914 875 ntBASIC17.15■□□□□ 0.34
Trav6d-4Q5R1I0 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6d-4Q5R1I0 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6d-4Q5R1I0 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Trav6d-4Q5R1I0 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav6d-4Q5R1I0 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav6d-4Q5R1I0 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav6d-4Q5R1I0 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trav6d-4Q5R1I0 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
Trav6d-4Q5R1I0 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav6d-4Q5R1I0 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC17.14■□□□□ 0.33
Trav6d-4Q5R1I0 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC17.14■□□□□ 0.33
Trav6d-4Q5R1I0 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav6d-4Q5R1I0 Krt8-201ENSMUST00000023952 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Trav6d-4Q5R1I0 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Trav6d-4Q5R1I0 AW121686-201ENSMUST00000181049 2200 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trav6d-4Q5R1I0 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Trav6d-4Q5R1I0 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav6d-4Q5R1I0 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Trav6d-4Q5R1I0 Gm43530-201ENSMUST00000195920 274 ntBASIC17.13■□□□□ 0.33
Trav6d-4Q5R1I0 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC17.13■□□□□ 0.33
Trav6d-4Q5R1I0 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav6d-4Q5R1I0 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav6d-4Q5R1I0 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav6d-4Q5R1I0 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Trav6d-4Q5R1I0 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav6d-4Q5R1I0 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
Trav6d-4Q5R1I0 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Trav6d-4Q5R1I0 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6d-4Q5R1I0 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6d-4Q5R1I0 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6d-4Q5R1I0 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6d-4Q5R1I0 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6d-4Q5R1I0 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6d-4Q5R1I0 Gm8770-201ENSMUST00000121113 1109 ntBASIC17.12■□□□□ 0.33
Trav6d-4Q5R1I0 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6d-4Q5R1I0 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6d-4Q5R1I0 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Trav6d-4Q5R1I0 Gm27454-201ENSMUST00000185090 204 ntBASIC17.12■□□□□ 0.33
Trav6d-4Q5R1I0 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 37.9 ms