Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC21.87■■□□□ 1.09
Upf3bQ3ULL6 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC21.87■■□□□ 1.09
Upf3bQ3ULL6 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
Upf3bQ3ULL6 Gm7143-201ENSMUST00000222811 859 ntBASIC21.87■■□□□ 1.09
Upf3bQ3ULL6 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
Upf3bQ3ULL6 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Upf3bQ3ULL6 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Upf3bQ3ULL6 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
Upf3bQ3ULL6 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC21.86■■□□□ 1.09
Upf3bQ3ULL6 H3f3a-207ENSMUST00000162814 724 ntAPPRIS P2 TSL 3 BASIC21.86■■□□□ 1.09
Upf3bQ3ULL6 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Upf3bQ3ULL6 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
Upf3bQ3ULL6 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
Upf3bQ3ULL6 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Upf3bQ3ULL6 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC21.85■■□□□ 1.09
Upf3bQ3ULL6 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC21.85■■□□□ 1.09
Upf3bQ3ULL6 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Upf3bQ3ULL6 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Upf3bQ3ULL6 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Upf3bQ3ULL6 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Upf3bQ3ULL6 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC21.84■■□□□ 1.09
Upf3bQ3ULL6 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
Upf3bQ3ULL6 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Upf3bQ3ULL6 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC21.84■■□□□ 1.09
Upf3bQ3ULL6 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC21.84■■□□□ 1.09
Upf3bQ3ULL6 Kiss1-203ENSMUST00000193888 624 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
Upf3bQ3ULL6 Gm9870-201ENSMUST00000063874 645 ntBASIC21.84■■□□□ 1.09
Upf3bQ3ULL6 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Upf3bQ3ULL6 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Upf3bQ3ULL6 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
Upf3bQ3ULL6 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Upf3bQ3ULL6 Tmed10-201ENSMUST00000040766 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Upf3bQ3ULL6 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Upf3bQ3ULL6 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Upf3bQ3ULL6 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Upf3bQ3ULL6 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Upf3bQ3ULL6 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Upf3bQ3ULL6 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC21.83■■□□□ 1.09
Upf3bQ3ULL6 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Upf3bQ3ULL6 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Upf3bQ3ULL6 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
Upf3bQ3ULL6 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Upf3bQ3ULL6 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
Upf3bQ3ULL6 Pkm-201ENSMUST00000034834 2432 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
Upf3bQ3ULL6 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Upf3bQ3ULL6 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Upf3bQ3ULL6 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Upf3bQ3ULL6 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC21.82■■□□□ 1.08
Upf3bQ3ULL6 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Upf3bQ3ULL6 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
Upf3bQ3ULL6 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Upf3bQ3ULL6 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
Upf3bQ3ULL6 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Upf3bQ3ULL6 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC21.81■■□□□ 1.08
Upf3bQ3ULL6 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Upf3bQ3ULL6 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Upf3bQ3ULL6 Fbxo24-201ENSMUST00000031732 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Upf3bQ3ULL6 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
Upf3bQ3ULL6 Srm-201ENSMUST00000006611 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Upf3bQ3ULL6 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
Upf3bQ3ULL6 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Upf3bQ3ULL6 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Upf3bQ3ULL6 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Upf3bQ3ULL6 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Upf3bQ3ULL6 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Upf3bQ3ULL6 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC21.8■■□□□ 1.08
Upf3bQ3ULL6 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC21.8■■□□□ 1.08
Upf3bQ3ULL6 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Upf3bQ3ULL6 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Upf3bQ3ULL6 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Upf3bQ3ULL6 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Upf3bQ3ULL6 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Upf3bQ3ULL6 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Upf3bQ3ULL6 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Upf3bQ3ULL6 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC21.79■■□□□ 1.08
Upf3bQ3ULL6 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
Upf3bQ3ULL6 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
Upf3bQ3ULL6 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Upf3bQ3ULL6 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Upf3bQ3ULL6 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Upf3bQ3ULL6 Dleu2-211ENSMUST00000183066 788 ntTSL 3 BASIC21.78■■□□□ 1.08
Upf3bQ3ULL6 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Upf3bQ3ULL6 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
Upf3bQ3ULL6 Tmem178-201ENSMUST00000025092 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Upf3bQ3ULL6 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Upf3bQ3ULL6 AC122428.2-201ENSMUST00000216321 1832 ntBASIC21.78■■□□□ 1.08
Upf3bQ3ULL6 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Upf3bQ3ULL6 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Upf3bQ3ULL6 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC21.77■■□□□ 1.08
Upf3bQ3ULL6 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Upf3bQ3ULL6 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Upf3bQ3ULL6 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC21.76■■□□□ 1.07
Upf3bQ3ULL6 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Upf3bQ3ULL6 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Upf3bQ3ULL6 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Upf3bQ3ULL6 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Upf3bQ3ULL6 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Upf3bQ3ULL6 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Upf3bQ3ULL6 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Upf3bQ3ULL6 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms