Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shox2P70390 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shox2P70390 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shox2P70390 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Shox2P70390 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shox2P70390 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shox2P70390 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Shox2P70390 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Shox2P70390 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shox2P70390 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
Shox2P70390 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Shox2P70390 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Shox2P70390 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Shox2P70390 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Shox2P70390 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC20.3■□□□□ 0.84
Shox2P70390 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Shox2P70390 Pdss1-207ENSMUST00000152170 1538 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Shox2P70390 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Shox2P70390 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC20.3■□□□□ 0.84
Shox2P70390 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC20.3■□□□□ 0.84
Shox2P70390 1700034H15Rik-201ENSMUST00000069573 1461 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Shox2P70390 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Shox2P70390 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.29■□□□□ 0.84
Shox2P70390 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Shox2P70390 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Shox2P70390 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shox2P70390 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shox2P70390 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shox2P70390 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Shox2P70390 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC20.28■□□□□ 0.84
Shox2P70390 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Shox2P70390 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Shox2P70390 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Shox2P70390 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Shox2P70390 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Shox2P70390 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Shox2P70390 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Shox2P70390 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
Shox2P70390 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Shox2P70390 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Shox2P70390 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Shox2P70390 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Shox2P70390 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Shox2P70390 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Shox2P70390 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Shox2P70390 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Shox2P70390 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Shox2P70390 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Shox2P70390 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
Shox2P70390 1700003E16Rik-201ENSMUST00000032106 2020 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Shox2P70390 Ipmk-203ENSMUST00000121446 1492 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Shox2P70390 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shox2P70390 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shox2P70390 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shox2P70390 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shox2P70390 Golph3-205ENSMUST00000228671 2842 ntBASIC20.25■□□□□ 0.83
Shox2P70390 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shox2P70390 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Shox2P70390 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Shox2P70390 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Shox2P70390 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Shox2P70390 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Shox2P70390 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Shox2P70390 Zbtb7a-203ENSMUST00000119606 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Shox2P70390 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Shox2P70390 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Shox2P70390 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shox2P70390 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shox2P70390 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Shox2P70390 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Shox2P70390 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Shox2P70390 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shox2P70390 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC20.23■□□□□ 0.83
Shox2P70390 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Shox2P70390 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
Shox2P70390 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.23■□□□□ 0.83
Shox2P70390 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Shox2P70390 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shox2P70390 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Shox2P70390 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC20.22■□□□□ 0.83
Shox2P70390 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC20.22■□□□□ 0.83
Shox2P70390 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shox2P70390 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shox2P70390 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Shox2P70390 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shox2P70390 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Shox2P70390 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC20.21■□□□□ 0.83
Shox2P70390 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shox2P70390 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Shox2P70390 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shox2P70390 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shox2P70390 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shox2P70390 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shox2P70390 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC20.21■□□□□ 0.83
Shox2P70390 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC20.21■□□□□ 0.83
Shox2P70390 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Shox2P70390 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shox2P70390 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shox2P70390 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Shox2P70390 Ache-209ENSMUST00000196208 1911 ntTSL 5 BASIC20.21■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms