Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Shmt1P50431 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC21.7■■□□□ 1.06
Shmt1P50431 Adad2-201ENSMUST00000098361 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Shmt1P50431 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Shmt1P50431 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Shmt1P50431 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC21.69■■□□□ 1.06
Shmt1P50431 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Shmt1P50431 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Shmt1P50431 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Shmt1P50431 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Shmt1P50431 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Shmt1P50431 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Shmt1P50431 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Shmt1P50431 Gm13042-201ENSMUST00000119244 1955 ntBASIC21.68■■□□□ 1.06
Shmt1P50431 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Shmt1P50431 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Shmt1P50431 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC21.67■■□□□ 1.06
Shmt1P50431 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Shmt1P50431 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Shmt1P50431 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC21.67■■□□□ 1.06
Shmt1P50431 B3galnt1-201ENSMUST00000061826 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Shmt1P50431 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Shmt1P50431 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Shmt1P50431 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Shmt1P50431 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
Shmt1P50431 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Shmt1P50431 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Shmt1P50431 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Shmt1P50431 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
Shmt1P50431 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Shmt1P50431 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Shmt1P50431 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Shmt1P50431 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Shmt1P50431 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Shmt1P50431 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Shmt1P50431 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Shmt1P50431 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Shmt1P50431 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC21.65■■□□□ 1.06
Shmt1P50431 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
Shmt1P50431 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
Shmt1P50431 Ccne1-201ENSMUST00000108023 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Shmt1P50431 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Shmt1P50431 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC21.65■■□□□ 1.06
Shmt1P50431 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
Shmt1P50431 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Shmt1P50431 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Shmt1P50431 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Shmt1P50431 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Shmt1P50431 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Shmt1P50431 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Shmt1P50431 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Shmt1P50431 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Shmt1P50431 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Shmt1P50431 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Shmt1P50431 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Shmt1P50431 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Shmt1P50431 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Shmt1P50431 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Shmt1P50431 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Shmt1P50431 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Shmt1P50431 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC21.62■■□□□ 1.05
Shmt1P50431 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Shmt1P50431 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC21.62■■□□□ 1.05
Shmt1P50431 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC21.62■■□□□ 1.05
Shmt1P50431 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Shmt1P50431 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Shmt1P50431 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Shmt1P50431 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Shmt1P50431 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Shmt1P50431 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Shmt1P50431 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Shmt1P50431 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Shmt1P50431 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Shmt1P50431 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.61■■□□□ 1.05
Shmt1P50431 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Shmt1P50431 Gm9207-201ENSMUST00000198773 1115 ntBASIC21.61■■□□□ 1.05
Shmt1P50431 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Shmt1P50431 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Shmt1P50431 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Shmt1P50431 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Shmt1P50431 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Shmt1P50431 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
Shmt1P50431 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Shmt1P50431 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
Shmt1P50431 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Shmt1P50431 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC21.6■■□□□ 1.05
Shmt1P50431 AC122428.2-201ENSMUST00000216321 1832 ntBASIC21.59■■□□□ 1.05
Shmt1P50431 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC21.59■■□□□ 1.05
Shmt1P50431 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC21.59■■□□□ 1.05
Shmt1P50431 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC21.59■■□□□ 1.05
Shmt1P50431 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC21.59■■□□□ 1.05
Shmt1P50431 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Shmt1P50431 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Shmt1P50431 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Shmt1P50431 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Shmt1P50431 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC21.58■■□□□ 1.04
Shmt1P50431 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Shmt1P50431 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
Shmt1P50431 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Shmt1P50431 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 56.6 ms