Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rfx3P48381 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
Rfx3P48381 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Rfx3P48381 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
Rfx3P48381 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx3P48381 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC18.39■□□□□ 0.53
Rfx3P48381 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx3P48381 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Rfx3P48381 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx3P48381 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx3P48381 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
Rfx3P48381 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx3P48381 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx3P48381 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Rfx3P48381 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx3P48381 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC18.38■□□□□ 0.53
Rfx3P48381 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx3P48381 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Rfx3P48381 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC18.38■□□□□ 0.53
Rfx3P48381 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx3P48381 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Rfx3P48381 Slc35f3-201ENSMUST00000108759 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx3P48381 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Rfx3P48381 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Rfx3P48381 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rfx3P48381 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Rfx3P48381 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rfx3P48381 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Rfx3P48381 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC18.37■□□□□ 0.53
Rfx3P48381 Zfand2b-204ENSMUST00000160439 1206 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Rfx3P48381 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC18.37■□□□□ 0.53
Rfx3P48381 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
Rfx3P48381 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Rfx3P48381 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx3P48381 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx3P48381 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx3P48381 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
Rfx3P48381 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx3P48381 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC18.36■□□□□ 0.53
Rfx3P48381 Gm43566-201ENSMUST00000196851 808 ntBASIC18.36■□□□□ 0.53
Rfx3P48381 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx3P48381 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx3P48381 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC18.36■□□□□ 0.53
Rfx3P48381 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx3P48381 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx3P48381 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx3P48381 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx3P48381 Otud1-201ENSMUST00000052168 2832 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
Rfx3P48381 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Rfx3P48381 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC18.35■□□□□ 0.53
Rfx3P48381 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC18.35■□□□□ 0.53
Rfx3P48381 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx3P48381 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx3P48381 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC18.35■□□□□ 0.53
Rfx3P48381 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx3P48381 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx3P48381 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx3P48381 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC18.35■□□□□ 0.53
Rfx3P48381 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx3P48381 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx3P48381 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Rfx3P48381 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rfx3P48381 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Rfx3P48381 Gm44949-201ENSMUST00000206423 1450 ntBASIC18.34■□□□□ 0.53
Rfx3P48381 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Rfx3P48381 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
Rfx3P48381 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Rfx3P48381 Gm13238-201ENSMUST00000117655 780 ntBASIC18.33■□□□□ 0.52
Rfx3P48381 Gm16464-201ENSMUST00000117815 1095 ntBASIC18.33■□□□□ 0.52
Rfx3P48381 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
Rfx3P48381 Snhg20-203ENSMUST00000182811 2153 ntBASIC18.32■□□□□ 0.52
Rfx3P48381 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Rfx3P48381 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rfx3P48381 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rfx3P48381 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rfx3P48381 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rfx3P48381 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Rfx3P48381 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Rfx3P48381 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx3P48381 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx3P48381 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
Rfx3P48381 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx3P48381 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx3P48381 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx3P48381 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Rfx3P48381 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Rfx3P48381 Sac3d1-201ENSMUST00000113533 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx3P48381 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx3P48381 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx3P48381 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx3P48381 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx3P48381 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx3P48381 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Rfx3P48381 Efna3-203ENSMUST00000200436 742 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Rfx3P48381 4930524J08Rik-201ENSMUST00000046721 603 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Rfx3P48381 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Rfx3P48381 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Rfx3P48381 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx3P48381 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Rfx3P48381 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms