Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cxcl12P40224 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cxcl12P40224 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Cxcl12P40224 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
Cxcl12P40224 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cxcl12P40224 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cxcl12P40224 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Cxcl12P40224 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cxcl12P40224 Gm11421-201ENSMUST00000122124 294 ntBASIC21.34■■□□□ 1.01
Cxcl12P40224 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC21.34■■□□□ 1.01
Cxcl12P40224 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Cxcl12P40224 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cxcl12P40224 C1ql2-201ENSMUST00000037286 2000 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Cxcl12P40224 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Cxcl12P40224 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
Cxcl12P40224 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC21.33■■□□□ 1.01
Cxcl12P40224 Flot2-201ENSMUST00000072289 2621 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Cxcl12P40224 Cdkn2aipnl-201ENSMUST00000102763 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cxcl12P40224 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Cxcl12P40224 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cxcl12P40224 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC21.32■■□□□ 1
Cxcl12P40224 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC21.32■■□□□ 1
Cxcl12P40224 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cxcl12P40224 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC21.32■■□□□ 1
Cxcl12P40224 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cxcl12P40224 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC21.32■■□□□ 1
Cxcl12P40224 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Cxcl12P40224 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Cxcl12P40224 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Cxcl12P40224 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Cxcl12P40224 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC21.31■■□□□ 1
Cxcl12P40224 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC21.31■■□□□ 1
Cxcl12P40224 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC21.31■■□□□ 1
Cxcl12P40224 AC161052.2-201ENSMUST00000220969 1375 ntTSL 5 BASIC21.31■■□□□ 1
Cxcl12P40224 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Cxcl12P40224 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC21.31■■□□□ 1
Cxcl12P40224 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC21.3■■□□□ 1
Cxcl12P40224 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Cxcl12P40224 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC21.3■■□□□ 1
Cxcl12P40224 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
Cxcl12P40224 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
Cxcl12P40224 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
Cxcl12P40224 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC21.29■■□□□ 1
Cxcl12P40224 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Cxcl12P40224 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC21.29■■□□□ 1
Cxcl12P40224 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC21.29■■□□□ 1
Cxcl12P40224 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cxcl12P40224 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
Cxcl12P40224 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
Cxcl12P40224 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC21.29■■□□□ 1
Cxcl12P40224 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC21.29■■□□□ 1
Cxcl12P40224 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC21.29■■□□□ 1
Cxcl12P40224 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Cxcl12P40224 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cxcl12P40224 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cxcl12P40224 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Cxcl12P40224 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC21.29■■□□□ 1
Cxcl12P40224 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
Cxcl12P40224 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cxcl12P40224 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cxcl12P40224 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC21.28■■□□□ 1
Cxcl12P40224 Gm9988-201ENSMUST00000069786 435 ntBASIC21.28■■□□□ 1
Cxcl12P40224 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC21.28■■□□□ 1
Cxcl12P40224 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC21.28■■□□□ 1
Cxcl12P40224 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Cxcl12P40224 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cxcl12P40224 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC21.27■■□□□ 1
Cxcl12P40224 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC21.27■■□□□ 1
Cxcl12P40224 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Cxcl12P40224 Gm44949-201ENSMUST00000206423 1450 ntBASIC21.26■□□□□ 0.99
Cxcl12P40224 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cxcl12P40224 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Cxcl12P40224 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cxcl12P40224 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC21.26■□□□□ 0.99
Cxcl12P40224 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cxcl12P40224 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Cxcl12P40224 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC21.26■□□□□ 0.99
Cxcl12P40224 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cxcl12P40224 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cxcl12P40224 Nespas-201ENSMUST00000143738 1083 ntBASIC21.26■□□□□ 0.99
Cxcl12P40224 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC21.26■□□□□ 0.99
Cxcl12P40224 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Cxcl12P40224 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Cxcl12P40224 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC21.26■□□□□ 0.99
Cxcl12P40224 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cxcl12P40224 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC21.26■□□□□ 0.99
Cxcl12P40224 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cxcl12P40224 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Cxcl12P40224 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cxcl12P40224 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Cxcl12P40224 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Cxcl12P40224 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Cxcl12P40224 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cxcl12P40224 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Cxcl12P40224 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
Cxcl12P40224 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cxcl12P40224 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Cxcl12P40224 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC21.24■□□□□ 0.99
Cxcl12P40224 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Cxcl12P40224 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 14.3 ms