Protein–RNA interactions for Protein: P22518

Clk1, Dual specificity protein kinase CLK1, mousemouse

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk1P22518 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Clk1P22518 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Clk1P22518 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC18.83■□□□□ 0.61
Clk1P22518 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Clk1P22518 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
Clk1P22518 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
Clk1P22518 Mpzl1-202ENSMUST00000111435 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Clk1P22518 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Clk1P22518 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Clk1P22518 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC18.83■□□□□ 0.6
Clk1P22518 Gm15820-201ENSMUST00000201566 728 ntBASIC18.83■□□□□ 0.6
Clk1P22518 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Clk1P22518 Gm5131-201ENSMUST00000212776 1238 ntBASIC18.83■□□□□ 0.6
Clk1P22518 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Clk1P22518 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Clk1P22518 Gm44949-201ENSMUST00000206423 1450 ntBASIC18.83■□□□□ 0.6
Clk1P22518 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clk1P22518 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Clk1P22518 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clk1P22518 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clk1P22518 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clk1P22518 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Clk1P22518 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clk1P22518 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18.82■□□□□ 0.6
Clk1P22518 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Clk1P22518 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clk1P22518 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clk1P22518 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clk1P22518 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clk1P22518 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clk1P22518 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clk1P22518 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC18.81■□□□□ 0.6
Clk1P22518 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC18.81■□□□□ 0.6
Clk1P22518 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC18.81■□□□□ 0.6
Clk1P22518 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clk1P22518 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Clk1P22518 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clk1P22518 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC18.8■□□□□ 0.6
Clk1P22518 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Clk1P22518 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC18.8■□□□□ 0.6
Clk1P22518 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clk1P22518 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clk1P22518 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Clk1P22518 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Clk1P22518 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Clk1P22518 Gm26617-201ENSMUST00000180381 4429 ntTSL 3 BASIC18.79■□□□□ 0.6
Clk1P22518 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Clk1P22518 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Clk1P22518 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Clk1P22518 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Clk1P22518 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Clk1P22518 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Clk1P22518 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC18.79■□□□□ 0.6
Clk1P22518 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clk1P22518 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clk1P22518 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC18.78■□□□□ 0.6
Clk1P22518 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Clk1P22518 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clk1P22518 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Clk1P22518 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clk1P22518 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clk1P22518 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Clk1P22518 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Clk1P22518 Fam20b-202ENSMUST00000122424 4532 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Clk1P22518 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clk1P22518 Gm17324-201ENSMUST00000165499 922 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Clk1P22518 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Clk1P22518 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Clk1P22518 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Clk1P22518 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC18.77■□□□□ 0.59
Clk1P22518 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clk1P22518 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC18.76■□□□□ 0.59
Clk1P22518 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Clk1P22518 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Clk1P22518 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clk1P22518 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clk1P22518 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clk1P22518 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Clk1P22518 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clk1P22518 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Clk1P22518 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clk1P22518 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clk1P22518 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clk1P22518 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clk1P22518 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clk1P22518 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Clk1P22518 Gm5112-201ENSMUST00000204407 2368 ntBASIC18.75■□□□□ 0.59
Clk1P22518 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Clk1P22518 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC18.75■□□□□ 0.59
Clk1P22518 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Clk1P22518 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clk1P22518 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Clk1P22518 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clk1P22518 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clk1P22518 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clk1P22518 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC18.74■□□□□ 0.59
Clk1P22518 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clk1P22518 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clk1P22518 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Clk1P22518 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms