Protein–RNA interactions for Protein: O08791

Ebf3, Transcription factor COE3, mousemouse

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ebf3O08791 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ebf3O08791 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Ebf3O08791 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Ebf3O08791 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ebf3O08791 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Ebf3O08791 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ebf3O08791 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC21.17■□□□□ 0.98
Ebf3O08791 Gm11586-201ENSMUST00000123060 566 ntTSL 2 BASIC21.17■□□□□ 0.98
Ebf3O08791 Flvcr1-202ENSMUST00000191946 1216 ntBASIC21.17■□□□□ 0.98
Ebf3O08791 Krt8-ps-201ENSMUST00000208495 945 ntBASIC21.17■□□□□ 0.98
Ebf3O08791 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ebf3O08791 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Ebf3O08791 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Ebf3O08791 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ebf3O08791 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC21.16■□□□□ 0.98
Ebf3O08791 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ebf3O08791 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Ebf3O08791 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Ebf3O08791 Mir7075-201ENSMUST00000184187 82 ntBASIC21.16■□□□□ 0.98
Ebf3O08791 Gm2011-201ENSMUST00000203124 1263 ntBASIC21.16■□□□□ 0.98
Ebf3O08791 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Ebf3O08791 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Ebf3O08791 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ebf3O08791 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ebf3O08791 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ebf3O08791 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
Ebf3O08791 Kiss1-205ENSMUST00000195286 656 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ebf3O08791 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Ebf3O08791 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Ebf3O08791 4930444P10Rik-202ENSMUST00000145070 1844 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
Ebf3O08791 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Ebf3O08791 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ebf3O08791 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
Ebf3O08791 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
Ebf3O08791 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ebf3O08791 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ebf3O08791 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Ebf3O08791 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC21.14■□□□□ 0.97
Ebf3O08791 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Ebf3O08791 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ebf3O08791 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ebf3O08791 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ebf3O08791 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ebf3O08791 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ebf3O08791 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Ebf3O08791 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Ebf3O08791 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ebf3O08791 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Ebf3O08791 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Ebf3O08791 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ebf3O08791 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC21.12■□□□□ 0.97
Ebf3O08791 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ebf3O08791 Gm8495-201ENSMUST00000188740 694 ntBASIC21.12■□□□□ 0.97
Ebf3O08791 Gm10657-201ENSMUST00000193528 1031 ntBASIC21.12■□□□□ 0.97
Ebf3O08791 Slc35b2-207ENSMUST00000226086 850 ntBASIC21.12■□□□□ 0.97
Ebf3O08791 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ebf3O08791 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
Ebf3O08791 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ebf3O08791 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Ebf3O08791 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ebf3O08791 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ebf3O08791 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ebf3O08791 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ebf3O08791 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ebf3O08791 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC21.11■□□□□ 0.97
Ebf3O08791 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
Ebf3O08791 Gm18284-201ENSMUST00000172604 624 ntBASIC21.11■□□□□ 0.97
Ebf3O08791 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Ebf3O08791 Gm43017-201ENSMUST00000198296 752 ntBASIC21.11■□□□□ 0.97
Ebf3O08791 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ebf3O08791 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ebf3O08791 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ebf3O08791 Lypla2-201ENSMUST00000067567 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Ebf3O08791 Ttc39c-201ENSMUST00000025294 2571 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ebf3O08791 Thap8-201ENSMUST00000014072 1182 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Ebf3O08791 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ebf3O08791 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
Ebf3O08791 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Ebf3O08791 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC21.1■□□□□ 0.97
Ebf3O08791 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ebf3O08791 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ebf3O08791 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Ebf3O08791 Sh3rf3-202ENSMUST00000135526 1940 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Ebf3O08791 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
Ebf3O08791 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
Ebf3O08791 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC21.09■□□□□ 0.97
Ebf3O08791 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Ebf3O08791 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ebf3O08791 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Ebf3O08791 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
Ebf3O08791 Tinagl1-203ENSMUST00000105999 1952 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ebf3O08791 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ebf3O08791 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Ebf3O08791 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Ebf3O08791 Gm7143-201ENSMUST00000222811 859 ntBASIC21.08■□□□□ 0.97
Ebf3O08791 Kcna3-201ENSMUST00000052718 1902 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
Ebf3O08791 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ebf3O08791 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Ebf3O08791 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Ebf3O08791 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 18.2 ms