Protein–RNA interactions for Protein: J3QMG8

Trav13d-3, T cell receptor alpha variable 13D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-3J3QMG8 Gm7417-201ENSMUST00000192950 473 ntBASIC18■□□□□ 0.47
Trav13d-3J3QMG8 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC18■□□□□ 0.47
Trav13d-3J3QMG8 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC18■□□□□ 0.47
Trav13d-3J3QMG8 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC18■□□□□ 0.47
Trav13d-3J3QMG8 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Trav13d-3J3QMG8 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trav13d-3J3QMG8 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Trav13d-3J3QMG8 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trav13d-3J3QMG8 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Trav13d-3J3QMG8 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Trav13d-3J3QMG8 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trav13d-3J3QMG8 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trav13d-3J3QMG8 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trav13d-3J3QMG8 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC17.99■□□□□ 0.47
Trav13d-3J3QMG8 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trav13d-3J3QMG8 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Trav13d-3J3QMG8 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trav13d-3J3QMG8 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trav13d-3J3QMG8 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trav13d-3J3QMG8 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav13d-3J3QMG8 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav13d-3J3QMG8 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav13d-3J3QMG8 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav13d-3J3QMG8 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Trav13d-3J3QMG8 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav13d-3J3QMG8 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav13d-3J3QMG8 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trav13d-3J3QMG8 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trav13d-3J3QMG8 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav13d-3J3QMG8 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav13d-3J3QMG8 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trav13d-3J3QMG8 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav13d-3J3QMG8 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trav13d-3J3QMG8 Gm10685-201ENSMUST00000196120 433 ntTSL 3 BASIC17.97■□□□□ 0.47
Trav13d-3J3QMG8 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav13d-3J3QMG8 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav13d-3J3QMG8 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav13d-3J3QMG8 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trav13d-3J3QMG8 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav13d-3J3QMG8 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Trav13d-3J3QMG8 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav13d-3J3QMG8 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav13d-3J3QMG8 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Trav13d-3J3QMG8 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav13d-3J3QMG8 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Trav13d-3J3QMG8 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav13d-3J3QMG8 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC17.95■□□□□ 0.46
Trav13d-3J3QMG8 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Trav13d-3J3QMG8 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav13d-3J3QMG8 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav13d-3J3QMG8 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Trav13d-3J3QMG8 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
Trav13d-3J3QMG8 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav13d-3J3QMG8 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav13d-3J3QMG8 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav13d-3J3QMG8 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav13d-3J3QMG8 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav13d-3J3QMG8 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav13d-3J3QMG8 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav13d-3J3QMG8 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav13d-3J3QMG8 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC17.94■□□□□ 0.46
Trav13d-3J3QMG8 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav13d-3J3QMG8 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Trav13d-3J3QMG8 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
Trav13d-3J3QMG8 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Trav13d-3J3QMG8 Gm7143-201ENSMUST00000222811 859 ntBASIC17.94■□□□□ 0.46
Trav13d-3J3QMG8 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC17.94■□□□□ 0.46
Trav13d-3J3QMG8 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav13d-3J3QMG8 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav13d-3J3QMG8 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav13d-3J3QMG8 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav13d-3J3QMG8 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav13d-3J3QMG8 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav13d-3J3QMG8 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Trav13d-3J3QMG8 Tab2-204ENSMUST00000146444 4380 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Trav13d-3J3QMG8 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav13d-3J3QMG8 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav13d-3J3QMG8 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Trav13d-3J3QMG8 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC17.93■□□□□ 0.46
Trav13d-3J3QMG8 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav13d-3J3QMG8 Prkab1-201ENSMUST00000031486 2089 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav13d-3J3QMG8 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav13d-3J3QMG8 Irx5-202ENSMUST00000210246 2550 ntTSL 5 BASIC17.93■□□□□ 0.46
Trav13d-3J3QMG8 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav13d-3J3QMG8 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav13d-3J3QMG8 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav13d-3J3QMG8 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Trav13d-3J3QMG8 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav13d-3J3QMG8 Chadl-201ENSMUST00000072910 2548 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Trav13d-3J3QMG8 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav13d-3J3QMG8 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav13d-3J3QMG8 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav13d-3J3QMG8 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trav13d-3J3QMG8 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav13d-3J3QMG8 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC17.92■□□□□ 0.46
Trav13d-3J3QMG8 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav13d-3J3QMG8 Hsf1-207ENSMUST00000228371 2102 ntBASIC17.92■□□□□ 0.46
Trav13d-3J3QMG8 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Trav13d-3J3QMG8 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trav13d-3J3QMG8 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 32.7 ms