Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Cysltr2-202ENSMUST00000169168 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3aQ3ULJ3 Ripk4-202ENSMUST00000113743 3743 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3aQ3ULJ3 Cacna1g-210ENSMUST00000107792 7981 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Upf3aQ3ULJ3 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3aQ3ULJ3 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Th-202ENSMUST00000105929 1950 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Odf2l-201ENSMUST00000029920 2239 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Gm43417-201ENSMUST00000201586 5207 ntBASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Rnf133-202ENSMUST00000115354 1333 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Cog3-203ENSMUST00000227473 4197 ntBASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Gm19692-201ENSMUST00000203856 2084 ntBASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Trpm1-210ENSMUST00000205731 2575 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Ylpm1-202ENSMUST00000101202 4605 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Ostm1-202ENSMUST00000105497 770 ntTSL 2 BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Gm13047-201ENSMUST00000117116 815 ntBASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Gm12194-201ENSMUST00000117756 1012 ntBASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Gm13351-201ENSMUST00000118087 414 ntBASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Gm6322-201ENSMUST00000118789 1004 ntBASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Csf1-204ENSMUST00000120654 821 ntTSL 3 BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Spaca9-202ENSMUST00000124840 699 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Gm28038-201ENSMUST00000143119 378 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Gm22146-201ENSMUST00000157397 288 ntBASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 AC238811.4-201ENSMUST00000178019 1246 ntBASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Gm21778-201ENSMUST00000178779 471 ntBASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 AC238940.3-201ENSMUST00000178830 1246 ntBASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Gm9081-201ENSMUST00000182346 991 ntBASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Mir7051-201ENSMUST00000184167 73 ntBASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 AC153887.1-201ENSMUST00000219154 1253 ntTSL 5 BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Gm6722-201ENSMUST00000221586 390 ntBASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Pgap2-201ENSMUST00000033292 1201 ntAPPRIS ALT1 TSL 5 BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Mnd1-201ENSMUST00000047368 875 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Lxn-201ENSMUST00000058981 1112 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Gm13306-201ENSMUST00000098122 418 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Slc25a25-205ENSMUST00000113310 3278 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Gm9195-201ENSMUST00000208955 8870 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Fam160a2-201ENSMUST00000048079 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Mpv17l-204ENSMUST00000141971 2155 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Wnt9a-202ENSMUST00000108783 3318 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Zfp809-201ENSMUST00000072465 1425 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 Ccng1-201ENSMUST00000020576 3512 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3aQ3ULJ3 4930432E11Rik-202ENSMUST00000063585 10871 ntBASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Gm8146-201ENSMUST00000192106 1847 ntBASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Arhgap39-201ENSMUST00000036176 4500 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Slc25a13-203ENSMUST00000188414 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Gm45428-201ENSMUST00000209619 1789 ntBASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 6820426E19Rik-201ENSMUST00000204274 1970 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Papss1-201ENSMUST00000029666 2600 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Nrf1-220ENSMUST00000170535 1527 ntTSL 5 BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Btnl2-202ENSMUST00000178562 2563 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Btnl2-201ENSMUST00000025198 2564 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Gm3415-201ENSMUST00000110595 924 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Gm11560-201ENSMUST00000117567 948 ntBASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Gm11700-201ENSMUST00000119409 403 ntBASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Gm15726-201ENSMUST00000144738 509 ntTSL 3 BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Gm17192-201ENSMUST00000169031 511 ntBASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Gm4862-201ENSMUST00000170405 438 ntBASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Gm18776-201ENSMUST00000188833 654 ntBASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Mpv17-206ENSMUST00000201353 846 ntAPPRIS P3 TSL 3 BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Fam228a-203ENSMUST00000220978 861 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 1600002K03Rik-201ENSMUST00000041882 678 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Armc5-201ENSMUST00000044660 3834 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Gm3402-202ENSMUST00000077133 924 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Naa10-202ENSMUST00000096316 892 ntAPPRIS ALT2 TSL 2 BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Kndc1-201ENSMUST00000053445 7299 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Slc29a1-213ENSMUST00000167692 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3aQ3ULJ3 Slc26a5-201ENSMUST00000030878 2962 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3aQ3ULJ3 Gabpb1-204ENSMUST00000103227 2751 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
Upf3aQ3ULJ3 Grid2ip-203ENSMUST00000120825 3865 ntTSL 5 BASIC12.17□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms