Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Lect2-202ENSMUST00000225183 823 ntBASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Zfp957-202ENSMUST00000161649 2751 ntAPPRIS P1 TSL 5 BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Gm37422-201ENSMUST00000193794 4718 ntBASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Gm10110-202ENSMUST00000228705 3220 ntBASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Tns1-209ENSMUST00000187691 2813 ntTSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Vasn-201ENSMUST00000038770 2829 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Aff3-203ENSMUST00000095027 5857 ntAPPRIS P2 TSL 5 BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Elovl7-201ENSMUST00000022207 4013 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Asb7-202ENSMUST00000124899 4928 ntAPPRIS P1 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Zfp1-201ENSMUST00000077791 1811 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Scml2-201ENSMUST00000019101 4842 ntAPPRIS P3 TSL 1 (best) BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Iqsec1-201ENSMUST00000101151 6490 ntTSL 5 BASIC11.28□□□□□ -0.6
Col28a1Q2UY11 Pdha1-201ENSMUST00000033662 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Col28a1Q2UY11 Camk2g-203ENSMUST00000100837 3564 ntAPPRIS ALT1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Col28a1Q2UY11 Galr1-201ENSMUST00000065224 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.6
Col28a1Q2UY11 Ccdc162-212ENSMUST00000219054 3182 ntTSL 5 BASIC11.27□□□□□ -0.6
Col28a1Q2UY11 Npas2-201ENSMUST00000056815 4236 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Aak1-201ENSMUST00000003710 7203 ntAPPRIS P3 TSL 5 BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Cacna1c-205ENSMUST00000112825 7577 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Gm37348-201ENSMUST00000193104 1789 ntBASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Gm25214-201ENSMUST00000104573 129 ntBASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Gngt2-207ENSMUST00000107714 558 ntAPPRIS P1 TSL 3 BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Gm12058-201ENSMUST00000118614 437 ntBASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Gm12217-201ENSMUST00000118858 696 ntBASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Gm12566-201ENSMUST00000121479 359 ntBASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Has2os-201ENSMUST00000125401 485 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Arf4os-201ENSMUST00000166902 566 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 1700020N18Rik-201ENSMUST00000188956 547 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Gm42997-202ENSMUST00000200321 985 ntBASIC11.27□□□□□ -0.61
Col28a1Q2UY11 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Tmem14a-202ENSMUST00000027065 1168 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Hbb-y-201ENSMUST00000033229 633 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Prorsd1-201ENSMUST00000039900 918 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Olfr1413-201ENSMUST00000074859 1082 ntAPPRIS P1 BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Herc3-201ENSMUST00000031823 3596 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Slc38a3-201ENSMUST00000010208 2585 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Ehmt1-203ENSMUST00000102938 4680 ntAPPRIS ALT2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Cxcl12-203ENSMUST00000112871 3132 ntAPPRIS P4 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Synj2-203ENSMUST00000115784 2634 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Gm2673-201ENSMUST00000120958 1608 ntBASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Plin4-202ENSMUST00000190703 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Slc25a51-202ENSMUST00000116341 4438 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Svop-201ENSMUST00000058472 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Mtm1-203ENSMUST00000061970 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Bahcc1-201ENSMUST00000044985 10726 ntAPPRIS P3 TSL 5 BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Atic-201ENSMUST00000027384 2845 ntAPPRIS P1 TSL 1 (best) BASIC11.27□□□□□ -0.61
Col28a1Q2UY11 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Trub2-201ENSMUST00000048044 3408 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Nod1-201ENSMUST00000060655 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Clcn4-201ENSMUST00000000619 4607 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Gm26640-201ENSMUST00000180809 3524 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Fry-201ENSMUST00000087204 10893 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Gm18806-201ENSMUST00000207607 1775 ntBASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Pou1f1-201ENSMUST00000004964 1773 ntTSL 5 BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Mccc1os-202ENSMUST00000137198 2686 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Wdr36-201ENSMUST00000053663 3281 ntAPPRIS P4 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Gm38089-201ENSMUST00000193585 1514 ntBASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Ripk3-201ENSMUST00000022830 1892 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Mfsd7a-201ENSMUST00000031455 2508 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Amigo3-201ENSMUST00000085060 2543 ntAPPRIS P1 BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Gm14263-201ENSMUST00000117955 746 ntBASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Gm13326-201ENSMUST00000118730 1011 ntBASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Gm13869-201ENSMUST00000146978 1054 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Gm16555-201ENSMUST00000159971 1199 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Mir6927-201ENSMUST00000184494 71 ntBASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Gm33175-201ENSMUST00000211562 461 ntTSL 5 BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Rin1-201ENSMUST00000025818 4184 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Flot2-202ENSMUST00000073660 2568 ntAPPRIS ALT1 TSL 5 BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Slc38a8-201ENSMUST00000036748 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Gm4366-201ENSMUST00000201488 1342 ntBASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Atp6v1d-201ENSMUST00000021536 3667 ntAPPRIS P1 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Akap10-203ENSMUST00000108710 3394 ntTSL 2 BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Rbm14-202ENSMUST00000113793 3508 ntTSL 1 (best) BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 App-206ENSMUST00000227723 8167 ntAPPRIS ALT2 BASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Gm29245-201ENSMUST00000187332 1416 ntBASIC11.26□□□□□ -0.61
Col28a1Q2UY11 Samhd1-203ENSMUST00000109549 3245 ntAPPRIS ALT2 TSL 1 (best) BASIC11.26□□□□□ -0.61
Retrieved 100 of 76,532 protein–RNA pairs in 79.5 ms