Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 CU062626.3-201ENSMUST00000225522 1411 ntBASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 Maml2-202ENSMUST00000159294 6404 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 Cops7a-202ENSMUST00000112439 1328 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 AC154537.1-201ENSMUST00000226101 1304 ntBASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 Hs6st2-202ENSMUST00000114871 4351 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 4930522L14Rik-201ENSMUST00000100937 599 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 Tcea3-201ENSMUST00000102533 1251 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 Gm14028-201ENSMUST00000117434 479 ntBASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 Gm14071-201ENSMUST00000117817 509 ntBASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 Gm15515-201ENSMUST00000117827 822 ntBASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 Gm12216-202ENSMUST00000120776 826 ntAPPRIS ALT2 TSL 2 BASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 Gm23085-201ENSMUST00000157849 293 ntBASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 Gm27552-201ENSMUST00000183351 62 ntBASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 Gm27844-201ENSMUST00000183613 62 ntBASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 Gm38151-201ENSMUST00000195085 289 ntBASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 Gm37634-201ENSMUST00000195700 650 ntTSL 3 BASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 CT025694.1-201ENSMUST00000226188 934 ntBASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 Gm10254-201ENSMUST00000052888 867 ntBASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 Gm10308-201ENSMUST00000095183 742 ntAPPRIS P1 TSL 2 BASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 Uimc1-201ENSMUST00000026997 2931 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
Ddx56Q9D0R4 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Ddx56Q9D0R4 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC12.21□□□□□ -0.46
Ddx56Q9D0R4 6820426E19Rik-201ENSMUST00000204274 1970 ntTSL 1 (best) BASIC12.21□□□□□ -0.46
Ddx56Q9D0R4 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Ddx56Q9D0R4 Zfand2a-202ENSMUST00000110851 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Ddx56Q9D0R4 AC159308.2-201ENSMUST00000213592 2325 ntBASIC12.21□□□□□ -0.46
Ddx56Q9D0R4 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Ddx56Q9D0R4 Rpl15-202ENSMUST00000080281 1922 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Ddx56Q9D0R4 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Ddx56Q9D0R4 Gm38089-201ENSMUST00000193585 1514 ntBASIC12.21□□□□□ -0.46
Ddx56Q9D0R4 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC12.21□□□□□ -0.46
Ddx56Q9D0R4 Zbtb44-201ENSMUST00000115222 8861 ntTSL 5 BASIC12.21□□□□□ -0.46
Ddx56Q9D0R4 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.46
Ddx56Q9D0R4 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC12.21□□□□□ -0.46
Ddx56Q9D0R4 Synpo2l-202ENSMUST00000117386 3979 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Gm37931-201ENSMUST00000194686 2866 ntBASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Rab13-202ENSMUST00000107373 1415 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Hexim1-201ENSMUST00000053063 3495 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Gm14150-201ENSMUST00000122404 1354 ntBASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Cacng5-201ENSMUST00000039071 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Aars2-201ENSMUST00000024733 3348 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Gm17230-201ENSMUST00000171194 3942 ntBASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Mirt1-203ENSMUST00000181539 2259 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Rasgrp4-208ENSMUST00000161522 3242 ntTSL 5 BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Phldb2-201ENSMUST00000036355 5483 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Eif3i-201ENSMUST00000102593 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Lyzl6-202ENSMUST00000107014 802 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Zfp36l1-ps-201ENSMUST00000118349 899 ntBASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Rpl19-ps1-201ENSMUST00000121059 591 ntBASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Gm10714-201ENSMUST00000131346 874 ntTSL 2 BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 4930557F10Rik-201ENSMUST00000155432 630 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Gm24990-201ENSMUST00000157406 323 ntBASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Gm18734-201ENSMUST00000172937 808 ntBASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 1110059E24Rik-208ENSMUST00000179768 962 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 3110045C21Rik-201ENSMUST00000180638 1135 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Gm27341-201ENSMUST00000183570 106 ntBASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Gm28450-201ENSMUST00000187349 638 ntBASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Gm4482-201ENSMUST00000200876 742 ntBASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Gm43966-201ENSMUST00000203301 612 ntBASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Mir433-201ENSMUST00000093564 124 ntBASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Sdc1-201ENSMUST00000020911 3157 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Brwd1-204ENSMUST00000113829 9843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 4930588G17Rik-201ENSMUST00000208075 1474 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Bad-201ENSMUST00000025910 1451 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Mfsd14b-203ENSMUST00000155487 3832 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Igfbp4-201ENSMUST00000017637 3831 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 4931428F04Rik-201ENSMUST00000014981 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Wwp2-201ENSMUST00000166615 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Rasal2-204ENSMUST00000132699 4013 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Apon-202ENSMUST00000218722 1747 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Ddx56Q9D0R4 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Tbcd-201ENSMUST00000103013 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Gm7964-201ENSMUST00000051522 1378 ntBASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Znrf3-203ENSMUST00000172492 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Aplp2-209ENSMUST00000217641 3462 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Rbm6-207ENSMUST00000183032 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Cd55b-201ENSMUST00000112488 1325 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Klhl3-202ENSMUST00000160860 7149 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Ddx56Q9D0R4 Fosb-202ENSMUST00000207334 3664 ntTSL 5 BASIC12.19□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 32.5 ms