Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Rfx1P48377 Dlec1-206ENSMUST00000140326 5815 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Rfx1P48377 Foxd2os-201ENSMUST00000123272 2908 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Rfx1P48377 Cpsf7-201ENSMUST00000038379 3604 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Rfx1P48377 Gm13684-201ENSMUST00000152569 2264 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Rfx1P48377 Sh2d2a-202ENSMUST00000107581 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
Rfx1P48377 Gm20755-201ENSMUST00000196893 1827 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Rfx1P48377 Flicr-201ENSMUST00000144719 3455 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
Rfx1P48377 1700025G04Rik-201ENSMUST00000044581 9559 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Rfx1P48377 Brd3-201ENSMUST00000028282 5419 ntAPPRIS P3 TSL 5 BASIC13.82□□□□□ -0.2
Rfx1P48377 Slc6a9-209ENSMUST00000163288 2107 ntTSL 5 BASIC13.82□□□□□ -0.2
Rfx1P48377 Ntrk2-207ENSMUST00000225488 4706 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Rfx1P48377 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Rfx1P48377 Ccdc96-201ENSMUST00000060100 3585 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Rfx1P48377 4632404M16Rik-201ENSMUST00000197326 2882 ntBASIC13.82□□□□□ -0.2
Rfx1P48377 Sgk2-201ENSMUST00000018012 2693 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Rfx1P48377 Adgrv1-214ENSMUST00000224088 1492 ntBASIC13.82□□□□□ -0.2
Rfx1P48377 Srfbp1-201ENSMUST00000025406 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Rfx1P48377 Hrct1-201ENSMUST00000095109 1452 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Rfx1P48377 Cdhr4-211ENSMUST00000177173 2480 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Rfx1P48377 Lsamp-201ENSMUST00000078873 2951 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Rfx1P48377 Gm26640-201ENSMUST00000180809 3524 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Rfx1P48377 Cinp-201ENSMUST00000043716 2029 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Rfx1P48377 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
Rfx1P48377 Eif5a-205ENSMUST00000108608 775 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Rfx1P48377 Etfrf1-202ENSMUST00000111719 968 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Rfx1P48377 Gm5187-201ENSMUST00000117317 991 ntBASIC13.82□□□□□ -0.2
Rfx1P48377 AA672651-201ENSMUST00000151550 489 ntTSL 2 BASIC13.82□□□□□ -0.2
Rfx1P48377 Otx2os1-202ENSMUST00000183803 743 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Rfx1P48377 Gm19287-201ENSMUST00000203190 358 ntBASIC13.82□□□□□ -0.2
Rfx1P48377 AC133598.1-201ENSMUST00000224327 660 ntBASIC13.82□□□□□ -0.2
Rfx1P48377 4930447A16Rik-201ENSMUST00000022897 587 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Rfx1P48377 1110017D15Rik-201ENSMUST00000030152 1114 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Rfx1P48377 Gm10312-201ENSMUST00000078515 489 ntBASIC13.82□□□□□ -0.2
Rfx1P48377 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Rfx1P48377 Chil1-207ENSMUST00000153856 1839 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Rfx1P48377 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Rfx1P48377 Exoc4-203ENSMUST00000115080 2369 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Rfx1P48377 Carns1-201ENSMUST00000167055 3968 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Rfx1P48377 AC153506.1-201ENSMUST00000218768 2915 ntBASIC13.82□□□□□ -0.2
Rfx1P48377 Nmnat1-203ENSMUST00000119921 2657 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Rfx1P48377 Dzip1l-203ENSMUST00000112885 4350 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
Rfx1P48377 Ddx55-201ENSMUST00000071057 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Rfx1P48377 Pram1-201ENSMUST00000052079 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rfx1P48377 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Rfx1P48377 Ccdc57-201ENSMUST00000056781 3403 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rfx1P48377 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Rfx1P48377 Vars2-201ENSMUST00000043674 4425 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rfx1P48377 Col20a1-201ENSMUST00000108856 4489 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Rfx1P48377 Bnc2-202ENSMUST00000107198 3948 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Rfx1P48377 Odf2l-204ENSMUST00000106192 2425 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Rfx1P48377 Gm9544-201ENSMUST00000223349 2482 ntBASIC13.81□□□□□ -0.2
Rfx1P48377 Gm5740-201ENSMUST00000211003 1857 ntBASIC13.81□□□□□ -0.2
Rfx1P48377 Dpep1-201ENSMUST00000019422 2236 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rfx1P48377 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rfx1P48377 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rfx1P48377 1700030M09Rik-202ENSMUST00000181679 964 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Rfx1P48377 2010110E17Rik-201ENSMUST00000184161 879 ntBASIC13.81□□□□□ -0.2
Rfx1P48377 Gm9230-201ENSMUST00000188228 532 ntBASIC13.81□□□□□ -0.2
Rfx1P48377 Gm38002-201ENSMUST00000193255 180 ntBASIC13.81□□□□□ -0.2
Rfx1P48377 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rfx1P48377 CT571245.2-201ENSMUST00000218421 305 ntBASIC13.81□□□□□ -0.2
Rfx1P48377 AC025913.2-202ENSMUST00000219248 605 ntTSL 5 BASIC13.81□□□□□ -0.2
Rfx1P48377 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rfx1P48377 Tmprss4-201ENSMUST00000034599 2284 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rfx1P48377 Akt1-205ENSMUST00000128300 1342 ntTSL 5 BASIC13.81□□□□□ -0.2
Rfx1P48377 Gm42372-201ENSMUST00000206129 5067 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Rfx1P48377 Anks1b-218ENSMUST00000182595 3715 ntTSL 5 BASIC13.81□□□□□ -0.2
Rfx1P48377 Celf3-213ENSMUST00000199775 2351 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
Rfx1P48377 Tmem8b-209ENSMUST00000167153 4101 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rfx1P48377 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC13.81□□□□□ -0.2
Rfx1P48377 Zfp354a-204ENSMUST00000109122 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rfx1P48377 Usp5-201ENSMUST00000047510 3213 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rfx1P48377 Spata5-201ENSMUST00000029277 2890 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rfx1P48377 Htr1f-201ENSMUST00000063076 2509 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rfx1P48377 Iqgap3-201ENSMUST00000071812 5756 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Rfx1P48377 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Rfx1P48377 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Rfx1P48377 Igf1-201ENSMUST00000062862 2292 ntTSL 2 BASIC13.8□□□□□ -0.2
Rfx1P48377 Rufy2-203ENSMUST00000122231 2664 ntTSL 5 BASIC13.8□□□□□ -0.2
Rfx1P48377 Patz1-207ENSMUST00000134089 1904 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Rfx1P48377 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Rfx1P48377 4930563E18Rik-201ENSMUST00000180948 1553 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Rfx1P48377 Slc1a2-203ENSMUST00000111212 1957 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Rfx1P48377 Slc38a5-202ENSMUST00000115590 1983 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
Rfx1P48377 Ceacam18-201ENSMUST00000032663 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Rfx1P48377 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Rfx1P48377 Cntn4-203ENSMUST00000113258 2464 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Rfx1P48377 Pspc1-201ENSMUST00000022507 4114 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Rfx1P48377 Zfp429-201ENSMUST00000109732 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Rfx1P48377 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Rfx1P48377 Rpap2-204ENSMUST00000112654 2914 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Rfx1P48377 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
Rfx1P48377 Gm13297-201ENSMUST00000120205 934 ntBASIC13.8□□□□□ -0.2
Rfx1P48377 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Rfx1P48377 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC13.8□□□□□ -0.2
Rfx1P48377 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC13.8□□□□□ -0.2
Rfx1P48377 Gm45880-201ENSMUST00000213041 853 ntBASIC13.8□□□□□ -0.2
Rfx1P48377 Gm19309-201ENSMUST00000218295 205 ntBASIC13.8□□□□□ -0.2
Rfx1P48377 CT009738.1-201ENSMUST00000219031 809 ntBASIC13.8□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 35.2 ms