Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm14277-201ENSMUST00000121195 360 ntBASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Gm13570-201ENSMUST00000140763 309 ntBASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Myl4-201ENSMUST00000018800 879 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Ak6-205ENSMUST00000190729 1184 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Tob2-201ENSMUST00000050467 3994 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Gtf2i-216ENSMUST00000173888 2820 ntTSL 5 BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Rad17-201ENSMUST00000022136 2839 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Ppm1g-201ENSMUST00000031032 2307 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Sec14l1-202ENSMUST00000090433 4654 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 B230317F23Rik-201ENSMUST00000052189 2472 ntBASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Fam149a-201ENSMUST00000093526 5469 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Ubtf-202ENSMUST00000079589 3286 ntAPPRIS P3 TSL 5 BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Hs6st2-201ENSMUST00000088172 4318 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Hsd17b13-202ENSMUST00000112803 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Ccdc15-206ENSMUST00000217238 1747 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Ppp4r1-201ENSMUST00000073104 3850 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Zbtb42-201ENSMUST00000169593 3478 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Col28a1Q2UY11 Rps6ka6-203ENSMUST00000096348 4151 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Uspl1-201ENSMUST00000050472 3757 ntAPPRIS P4 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Ntrk2-201ENSMUST00000079828 8744 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Gm33831-201ENSMUST00000211696 1542 ntTSL 5 BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Mmel1-202ENSMUST00000080559 2926 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Vps18-201ENSMUST00000037280 4054 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Frmd4a-216ENSMUST00000176828 4355 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Gm14028-201ENSMUST00000117434 479 ntBASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Gm4909-201ENSMUST00000118749 794 ntBASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Ggnbp1-202ENSMUST00000122106 1107 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Gm38317-201ENSMUST00000195564 343 ntBASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Gm44415-201ENSMUST00000204151 2112 ntBASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Gm13097-201ENSMUST00000210722 397 ntBASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Ppcdc-207ENSMUST00000214339 738 ntTSL 2 BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Rpl24-201ENSMUST00000023269 677 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Gm10254-201ENSMUST00000052888 867 ntBASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Cryga-201ENSMUST00000061497 625 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Lhfpl5-201ENSMUST00000080780 1248 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Irak4-202ENSMUST00000109248 3437 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Ttc30b-201ENSMUST00000099996 2737 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Mog-201ENSMUST00000102665 1704 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Polr3e-201ENSMUST00000033173 4194 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Map4-203ENSMUST00000163979 3320 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Satb1-208ENSMUST00000144331 6243 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Rcor3-202ENSMUST00000110849 3791 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Dennd4a-201ENSMUST00000038890 8645 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Zfp866-202ENSMUST00000137573 3245 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 AC159195.3-201ENSMUST00000225162 2211 ntBASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Ndufa11-201ENSMUST00000002452 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Wdr75-201ENSMUST00000027139 2953 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Gm20696-201ENSMUST00000155466 3560 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
Col28a1Q2UY11 Rpap1-202ENSMUST00000099529 4813 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 9530082P21Rik-203ENSMUST00000181605 3162 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Msh5-201ENSMUST00000007250 2886 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Ldb2-204ENSMUST00000199256 2596 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Gm45206-201ENSMUST00000206885 2285 ntBASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Syk-201ENSMUST00000055087 5122 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Rad51ap1-202ENSMUST00000112221 1871 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Trip4-202ENSMUST00000119245 4211 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Adarb1-204ENSMUST00000105406 6662 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Plpbp-205ENSMUST00000209856 3954 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
Col28a1Q2UY11 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
Retrieved 100 of 76,532 protein–RNA pairs in 55.3 ms