Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Rab3c-202ENSMUST00000223922 2398 ntBASIC12.78□□□□□ -0.36
Lig3P97386 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC12.78□□□□□ -0.36
Lig3P97386 Mum1l1-204ENSMUST00000113045 4523 ntAPPRIS P1 TSL 3 BASIC12.78□□□□□ -0.36
Lig3P97386 Med12l-203ENSMUST00000040846 3747 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Dclk1-215ENSMUST00000200352 1662 ntTSL 2 BASIC12.78□□□□□ -0.36
Lig3P97386 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Mafb-201ENSMUST00000099126 3363 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Lig3P97386 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Hist1h3d-201ENSMUST00000105105 1249 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
Lig3P97386 Mup-ps26-201ENSMUST00000121751 202 ntBASIC12.78□□□□□ -0.36
Lig3P97386 Tsc22d1-206ENSMUST00000134109 801 ntTSL 2 BASIC12.78□□□□□ -0.36
Lig3P97386 Gm22138-201ENSMUST00000158748 128 ntBASIC12.78□□□□□ -0.36
Lig3P97386 Crhr2-204ENSMUST00000164012 1263 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Agtpbp1-216ENSMUST00000168821 721 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Gm10774-201ENSMUST00000188689 204 ntBASIC12.78□□□□□ -0.36
Lig3P97386 Gm5733-201ENSMUST00000190232 939 ntBASIC12.78□□□□□ -0.36
Lig3P97386 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 AC153505.1-201ENSMUST00000218819 1071 ntBASIC12.78□□□□□ -0.36
Lig3P97386 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Ggt1-201ENSMUST00000006508 2167 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Topbp1-201ENSMUST00000035164 5224 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Gtf2i-202ENSMUST00000082057 4375 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Lig3P97386 Slc35b3-202ENSMUST00000167513 1778 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Cnpy2-202ENSMUST00000219037 1383 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Rin2-201ENSMUST00000094480 4657 ntAPPRIS P2 TSL 5 BASIC12.78□□□□□ -0.36
Lig3P97386 Sod2-201ENSMUST00000007012 3824 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Nefl-201ENSMUST00000022639 3380 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Gm12248-202ENSMUST00000218429 1462 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Lig3P97386 Tspan14-201ENSMUST00000047652 2475 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Gm13264-201ENSMUST00000138416 2011 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Hao1-201ENSMUST00000028704 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Lig3P97386 Fam114a2-201ENSMUST00000020831 2557 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Lig3P97386 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Lig3P97386 Plrg1-202ENSMUST00000122128 1608 ntTSL 5 BASIC12.77□□□□□ -0.36
Lig3P97386 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Lig3P97386 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Lig3P97386 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC12.77□□□□□ -0.36
Lig3P97386 Gm37542-201ENSMUST00000192563 2832 ntBASIC12.77□□□□□ -0.36
Lig3P97386 Ccdc57-201ENSMUST00000056781 3403 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Lig3P97386 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Lig3P97386 Nedd9-202ENSMUST00000163623 4626 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.36
Lig3P97386 Rnf123-218ENSMUST00000178267 4309 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.37
Lig3P97386 Gm14169-201ENSMUST00000124676 2519 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Lig3P97386 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Lig3P97386 Ccl27a-204ENSMUST00000108035 731 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lig3P97386 Ccl27a-205ENSMUST00000108036 841 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
Lig3P97386 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC12.77□□□□□ -0.37
Lig3P97386 Gm12816-201ENSMUST00000118069 1212 ntBASIC12.77□□□□□ -0.37
Lig3P97386 Gm12314-201ENSMUST00000118104 538 ntBASIC12.77□□□□□ -0.37
Lig3P97386 Prss46-201ENSMUST00000119427 1211 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lig3P97386 Gm15573-201ENSMUST00000119487 540 ntBASIC12.77□□□□□ -0.37
Lig3P97386 Gm16323-201ENSMUST00000134920 556 ntTSL 3 BASIC12.77□□□□□ -0.37
Lig3P97386 Prss46-202ENSMUST00000176403 1257 ntAPPRIS P2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lig3P97386 Gm8494-201ENSMUST00000178171 1233 ntBASIC12.77□□□□□ -0.37
Lig3P97386 Gm37028-201ENSMUST00000194276 107 ntBASIC12.77□□□□□ -0.37
Lig3P97386 S100a3-205ENSMUST00000200508 587 ntAPPRIS P1 TSL 3 BASIC12.77□□□□□ -0.37
Lig3P97386 Gm43962-201ENSMUST00000203898 190 ntBASIC12.77□□□□□ -0.37
Lig3P97386 Gm31401-201ENSMUST00000207352 734 ntTSL 3 BASIC12.77□□□□□ -0.37
Lig3P97386 Gm40983-201ENSMUST00000222524 502 ntTSL 3 BASIC12.77□□□□□ -0.37
Lig3P97386 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lig3P97386 Gm5879-201ENSMUST00000089501 1209 ntBASIC12.77□□□□□ -0.37
Lig3P97386 Epha6-201ENSMUST00000068860 3930 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lig3P97386 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lig3P97386 Adh4-201ENSMUST00000013458 1314 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lig3P97386 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lig3P97386 Lrtm2-204ENSMUST00000168793 3407 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.37
Lig3P97386 Brd3-210ENSMUST00000164296 2791 ntAPPRIS P3 TSL 5 BASIC12.77□□□□□ -0.37
Lig3P97386 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Lig3P97386 Abca7-201ENSMUST00000043866 6590 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lig3P97386 Mroh1-201ENSMUST00000092595 5111 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lig3P97386 Inpp4a-211ENSMUST00000168546 2964 ntTSL 5 BASIC12.77□□□□□ -0.37
Lig3P97386 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lig3P97386 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lig3P97386 Hcn1-201ENSMUST00000006991 14141 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lig3P97386 Gm9129-201ENSMUST00000218173 1689 ntBASIC12.77□□□□□ -0.37
Lig3P97386 Nom1-201ENSMUST00000001611 9219 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lig3P97386 Slc25a48-201ENSMUST00000021971 3374 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Lig3P97386 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Lig3P97386 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lig3P97386 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lig3P97386 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.37
Lig3P97386 Nacc2-202ENSMUST00000114159 6675 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lig3P97386 Gm23596-201ENSMUST00000104304 132 ntBASIC12.76□□□□□ -0.37
Lig3P97386 Gm24891-201ENSMUST00000104391 136 ntBASIC12.76□□□□□ -0.37
Lig3P97386 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lig3P97386 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.76□□□□□ -0.37
Lig3P97386 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Lig3P97386 Tprkb-203ENSMUST00000113751 692 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Lig3P97386 Gm13394-201ENSMUST00000121658 1000 ntBASIC12.76□□□□□ -0.37
Lig3P97386 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Lig3P97386 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC12.76□□□□□ -0.37
Lig3P97386 Gm23085-201ENSMUST00000157849 293 ntBASIC12.76□□□□□ -0.37
Lig3P97386 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Lig3P97386 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC12.76□□□□□ -0.37
Lig3P97386 1700081H04Rik-201ENSMUST00000190550 1128 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 53.8 ms