Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
Col18a1P39061 Zkscan3-208ENSMUST00000224820 5398 ntBASIC15.02■□□□□ -0
Col18a1P39061 Mir705-201ENSMUST00000102058 82 ntBASIC15.02□□□□□ -0.01
Col18a1P39061 Gpr153-203ENSMUST00000105651 3777 ntAPPRIS P2 TSL 5 BASIC15.02□□□□□ -0.01
Col18a1P39061 Ces2e-202ENSMUST00000109410 1999 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col18a1P39061 Snx10-202ENSMUST00000114439 968 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col18a1P39061 Gm14592-201ENSMUST00000117201 560 ntBASIC15.02□□□□□ -0.01
Col18a1P39061 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC15.02□□□□□ -0.01
Col18a1P39061 Gm10537-201ENSMUST00000192625 1698 ntBASIC15.02□□□□□ -0.01
Col18a1P39061 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col18a1P39061 Gm36211-201ENSMUST00000198171 1497 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
Col18a1P39061 Gm42208-201ENSMUST00000198215 670 ntTSL 3 BASIC15.02□□□□□ -0.01
Col18a1P39061 Tti2-202ENSMUST00000209851 3133 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col18a1P39061 Gpr19-213ENSMUST00000215088 1484 ntTSL 5 BASIC15.02□□□□□ -0.01
Col18a1P39061 Ror2-201ENSMUST00000021918 3985 ntAPPRIS P2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col18a1P39061 Sfxn1-201ENSMUST00000021930 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col18a1P39061 AC163646.3-202ENSMUST00000228685 691 ntBASIC15.02□□□□□ -0.01
Col18a1P39061 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC15.02□□□□□ -0.01
Col18a1P39061 1700016D06Rik-201ENSMUST00000033906 1263 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col18a1P39061 Pex2-201ENSMUST00000059021 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col18a1P39061 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col18a1P39061 Zfp14-201ENSMUST00000077787 1506 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col18a1P39061 Wapl-205ENSMUST00000169910 4066 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col18a1P39061 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col18a1P39061 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Col18a1P39061 Ppid-201ENSMUST00000029382 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Slc10a1-202ENSMUST00000218162 1749 ntAPPRIS P2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 B4galnt2-201ENSMUST00000038343 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Smok2b-201ENSMUST00000059824 1584 ntAPPRIS P1 BASIC15.01□□□□□ -0.01
Col18a1P39061 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Spock3-203ENSMUST00000118003 2860 ntAPPRIS P3 TSL 5 BASIC15.01□□□□□ -0.01
Col18a1P39061 Dnaic2-201ENSMUST00000069325 2874 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col18a1P39061 Plac9b-201ENSMUST00000100809 388 ntTSL 2 BASIC15.01□□□□□ -0.01
Col18a1P39061 Gm24161-201ENSMUST00000104592 130 ntBASIC15.01□□□□□ -0.01
Col18a1P39061 Gm16480-201ENSMUST00000120439 832 ntBASIC15.01□□□□□ -0.01
Col18a1P39061 3110039M20Rik-201ENSMUST00000127041 868 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Fam229b-208ENSMUST00000139743 679 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col18a1P39061 Aamdc-209ENSMUST00000144858 380 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Tcstv1-202ENSMUST00000190512 875 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 2010008C14Rik-201ENSMUST00000203956 593 ntBASIC15.01□□□□□ -0.01
Col18a1P39061 Gm44173-201ENSMUST00000204316 132 ntBASIC15.01□□□□□ -0.01
Col18a1P39061 AC140381.2-201ENSMUST00000217935 1260 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Zfp868-201ENSMUST00000074982 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Klk1b22-201ENSMUST00000077528 855 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Slc25a22-203ENSMUST00000106007 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Cd19-201ENSMUST00000032968 2432 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Gm37391-201ENSMUST00000194891 2318 ntBASIC15.01□□□□□ -0.01
Col18a1P39061 Btrc-209ENSMUST00000224478 2194 ntBASIC15.01□□□□□ -0.01
Col18a1P39061 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Crhr2-208ENSMUST00000212633 2041 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Elfn1-201ENSMUST00000050519 3832 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Rnf10-203ENSMUST00000112097 3476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Gorab-201ENSMUST00000045138 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Igsf11-202ENSMUST00000114706 1578 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Hemk1-201ENSMUST00000035196 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Hormad2-202ENSMUST00000109948 1969 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col18a1P39061 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Prss23-201ENSMUST00000041761 3228 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Gm6276-201ENSMUST00000120159 579 ntBASIC15.01□□□□□ -0.01
Col18a1P39061 4930594O21Rik-201ENSMUST00000129750 629 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Chn2-209ENSMUST00000146114 1227 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Mir3100-201ENSMUST00000174918 65 ntBASIC15.01□□□□□ -0.01
Col18a1P39061 Gm45893-201ENSMUST00000211899 247 ntBASIC15.01□□□□□ -0.01
Col18a1P39061 Gm3635-201ENSMUST00000212314 354 ntBASIC15.01□□□□□ -0.01
Col18a1P39061 AC127583.1-201ENSMUST00000224351 540 ntBASIC15.01□□□□□ -0.01
Col18a1P39061 Gal-201ENSMUST00000025842 712 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 AY761184-201ENSMUST00000071886 503 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
Col18a1P39061 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
Col18a1P39061 Eif4g1-206ENSMUST00000115463 5378 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
Col18a1P39061 Scnn1g-201ENSMUST00000000221 2991 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col18a1P39061 Gm20498-203ENSMUST00000166664 2284 ntAPPRIS P1 TSL 2 BASIC15□□□□□ -0.01
Col18a1P39061 Nprl3-202ENSMUST00000109389 1642 ntAPPRIS ALT1 TSL 5 BASIC15□□□□□ -0.01
Col18a1P39061 Gm17141-201ENSMUST00000167578 3148 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col18a1P39061 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col18a1P39061 Sh3bp5l-201ENSMUST00000073128 2977 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col18a1P39061 Ufd1-201ENSMUST00000005394 1996 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col18a1P39061 Arrb2-201ENSMUST00000079056 1443 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col18a1P39061 Grik5-201ENSMUST00000003468 3763 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col18a1P39061 Gm43102-201ENSMUST00000201004 2324 ntBASIC15□□□□□ -0.01
Col18a1P39061 Dpep2-201ENSMUST00000034373 1702 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
Col18a1P39061 Gm24346-201ENSMUST00000158712 194 ntBASIC15□□□□□ -0.01
Col18a1P39061 Gm2663-201ENSMUST00000166306 862 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col18a1P39061 Gm17107-201ENSMUST00000170983 553 ntBASIC15□□□□□ -0.01
Col18a1P39061 Gm28262-201ENSMUST00000185463 477 ntTSL 5 BASIC15□□□□□ -0.01
Col18a1P39061 Gm3945-201ENSMUST00000196637 683 ntBASIC15□□□□□ -0.01
Col18a1P39061 Gm40414-201ENSMUST00000197608 481 ntBASIC15□□□□□ -0.01
Col18a1P39061 Gm34248-201ENSMUST00000200027 474 ntBASIC15□□□□□ -0.01
Col18a1P39061 Gm44388-201ENSMUST00000204350 258 ntBASIC15□□□□□ -0.01
Col18a1P39061 Gm35239-201ENSMUST00000218346 487 ntTSL 3 BASIC15□□□□□ -0.01
Col18a1P39061 CT009550.1-201ENSMUST00000225750 864 ntBASIC15□□□□□ -0.01
Col18a1P39061 Klf10-203ENSMUST00000227920 2144 ntBASIC15□□□□□ -0.01
Col18a1P39061 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
Col18a1P39061 Nup88-203ENSMUST00000108531 2453 ntTSL 1 (best) BASIC15□□□□□ -0.01
Col18a1P39061 Hat1-201ENSMUST00000028408 1576 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
Col18a1P39061 Gata2-202ENSMUST00000170089 3135 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col18a1P39061 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
Col18a1P39061 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC15□□□□□ -0.01
Retrieved 100 of 76,532 protein–RNA pairs in 47.4 ms