Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Mir483-201ENSMUST00000093631 73 ntBASIC13.04□□□□□ -0.32
Col2a1P28481 Rxfp3-201ENSMUST00000058007 4275 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Col2a1P28481 2410002F23Rik-203ENSMUST00000084937 2092 ntAPPRIS P2 TSL 2 BASIC13.03□□□□□ -0.32
Col2a1P28481 Cfap161-201ENSMUST00000011298 1335 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Gm37844-201ENSMUST00000192473 4097 ntBASIC13.03□□□□□ -0.32
Col2a1P28481 Klhdc10-206ENSMUST00000144272 1387 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Gfap-201ENSMUST00000067444 2648 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Col2a1P28481 Nme1-203ENSMUST00000135884 3181 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Emc7-201ENSMUST00000069747 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Cyp27b1-201ENSMUST00000165764 2380 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Acin1-201ENSMUST00000022793 4735 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Ndrg2-201ENSMUST00000004673 2099 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Sorcs1-206ENSMUST00000209783 3489 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Col2a1P28481 Ypel4-201ENSMUST00000090729 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Gm4419-201ENSMUST00000180671 1729 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Cer1-201ENSMUST00000048430 1739 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Ntrk2-208ENSMUST00000225583 2719 ntBASIC13.03□□□□□ -0.32
Col2a1P28481 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Arrb1-201ENSMUST00000032995 3715 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Eif4g3-215ENSMUST00000203828 5289 ntTSL 5 BASIC13.03□□□□□ -0.32
Col2a1P28481 Gm14234-201ENSMUST00000119539 845 ntBASIC13.03□□□□□ -0.32
Col2a1P28481 Churc1-203ENSMUST00000126408 462 ntTSL 2 BASIC13.03□□□□□ -0.32
Col2a1P28481 Gm11884-201ENSMUST00000131639 641 ntTSL 5 BASIC13.03□□□□□ -0.32
Col2a1P28481 Vmn2r-ps54-203ENSMUST00000150856 1142 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Gm26918-201ENSMUST00000182496 728 ntTSL 2 BASIC13.03□□□□□ -0.32
Col2a1P28481 Nras-208ENSMUST00000200069 831 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
Col2a1P28481 Tex29-205ENSMUST00000209692 884 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Col2a1P28481 Gm3433-201ENSMUST00000210149 1058 ntBASIC13.03□□□□□ -0.32
Col2a1P28481 4930431F10Rik-201ENSMUST00000213122 1157 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 AC102569.1-201ENSMUST00000221563 685 ntBASIC13.03□□□□□ -0.32
Col2a1P28481 Gm7959-201ENSMUST00000221823 1078 ntBASIC13.03□□□□□ -0.32
Col2a1P28481 CT030166.5-201ENSMUST00000222249 420 ntBASIC13.03□□□□□ -0.32
Col2a1P28481 Gm4604-201ENSMUST00000025040 390 ntBASIC13.03□□□□□ -0.32
Col2a1P28481 Myl9-201ENSMUST00000088552 1128 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Sufu-201ENSMUST00000039922 4522 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Col2a1P28481 AC166574.4-201ENSMUST00000227165 1937 ntBASIC13.03□□□□□ -0.32
Col2a1P28481 Rap1gap2-202ENSMUST00000102521 6565 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Col2a1P28481 Rbm10-202ENSMUST00000082089 2562 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
Col2a1P28481 Acsf2-201ENSMUST00000103164 3154 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col2a1P28481 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col2a1P28481 4930558J22Rik-201ENSMUST00000139822 1480 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Col2a1P28481 Paqr8-203ENSMUST00000187651 1463 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Col2a1P28481 Gpd2-201ENSMUST00000028167 5620 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Col2a1P28481 Abi2-201ENSMUST00000052332 5768 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Col2a1P28481 Gm13093-201ENSMUST00000126212 2485 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 Prrc2a-206ENSMUST00000174805 6741 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 Plin2-201ENSMUST00000000466 1888 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 Osbpl8-202ENSMUST00000105275 7204 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 Ppip5k2-201ENSMUST00000042509 5882 ntAPPRIS P2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 Zfp37-206ENSMUST00000222050 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 Gm13549-201ENSMUST00000118339 796 ntBASIC13.02□□□□□ -0.33
Col2a1P28481 4930507D10Rik-201ENSMUST00000137411 1152 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 Anp32e-206ENSMUST00000169426 915 ntTSL 5 BASIC13.02□□□□□ -0.33
Col2a1P28481 1700017I07Rik-201ENSMUST00000184823 462 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 1700063K16Rik-201ENSMUST00000190306 369 ntBASIC13.02□□□□□ -0.33
Col2a1P28481 Fkbp6-204ENSMUST00000201791 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 Gm44216-201ENSMUST00000203942 157 ntBASIC13.02□□□□□ -0.33
Col2a1P28481 AC130477.1-201ENSMUST00000226982 420 ntBASIC13.02□□□□□ -0.33
Col2a1P28481 Tspo2-201ENSMUST00000024794 956 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 Hk3-203ENSMUST00000126234 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Col2a1P28481 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 Xndc1-201ENSMUST00000094130 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 Zfp872-201ENSMUST00000091508 1395 ntTSL 5 BASIC13.02□□□□□ -0.33
Col2a1P28481 Ffar2-201ENSMUST00000053156 2301 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 Qrich1-201ENSMUST00000006851 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 A530053M12Rik-201ENSMUST00000187918 1467 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 Gm9544-201ENSMUST00000223349 2482 ntBASIC13.02□□□□□ -0.33
Col2a1P28481 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC13.02□□□□□ -0.33
Col2a1P28481 Apol9a-202ENSMUST00000089452 1527 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 Dmtn-208ENSMUST00000228009 2643 ntAPPRIS P2 BASIC13.02□□□□□ -0.33
Col2a1P28481 Cpt1c-206ENSMUST00000212836 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Col2a1P28481 Ccdc78-201ENSMUST00000095500 1651 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Col2a1P28481 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col2a1P28481 Kcnc1-201ENSMUST00000025202 7760 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Col2a1P28481 Egr1-202ENSMUST00000165033 3036 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Col2a1P28481 Gm14005-209ENSMUST00000224993 1832 ntBASIC13.01□□□□□ -0.33
Col2a1P28481 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col2a1P28481 2900026A02Rik-201ENSMUST00000050125 5876 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col2a1P28481 A130010J15Rik-204ENSMUST00000161235 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col2a1P28481 Gtf2ird1-201ENSMUST00000073161 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col2a1P28481 Olfr601-203ENSMUST00000214110 2196 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Col2a1P28481 Olfr601-204ENSMUST00000217416 2195 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Col2a1P28481 Grip1-202ENSMUST00000077871 3720 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col2a1P28481 A230077H06Rik-202ENSMUST00000189574 2477 ntTSL 2 BASIC13.01□□□□□ -0.33
Col2a1P28481 Slc8a2-201ENSMUST00000168693 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Col2a1P28481 A230006K03Rik-202ENSMUST00000154958 901 ntTSL 5 BASIC13.01□□□□□ -0.33
Col2a1P28481 4930405N21Rik-201ENSMUST00000199950 1200 ntBASIC13.01□□□□□ -0.33
Col2a1P28481 Gm35713-201ENSMUST00000210516 199 ntBASIC13.01□□□□□ -0.33
Col2a1P28481 Gm5178-201ENSMUST00000219380 898 ntBASIC13.01□□□□□ -0.33
Col2a1P28481 Adipoq-201ENSMUST00000023593 1292 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 60.1 ms