Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Pcdh1-202ENSMUST00000159405 3880 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Mamdc4-202ENSMUST00000114223 3998 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Abca7-202ENSMUST00000132517 6696 ntAPPRIS P3 TSL 5 BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Mcpt9-201ENSMUST00000095798 2000 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 EU599041-202ENSMUST00000205291 1386 ntTSL 5 BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Adrb3-201ENSMUST00000081438 2795 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Jpt2-201ENSMUST00000024981 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Plcg1-203ENSMUST00000109462 5107 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Gm15784-201ENSMUST00000120260 1462 ntBASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Apol7e-201ENSMUST00000096358 2227 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Poc1a-201ENSMUST00000072206 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3aQ3ULJ3 Tcp10b-202ENSMUST00000116666 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Ush1c-209ENSMUST00000222454 2580 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Neu2-207ENSMUST00000172222 1715 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Tcf4-250ENSMUST00000202458 2610 ntTSL 5 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Capn3-203ENSMUST00000090028 2640 ntTSL 5 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Tbx10-201ENSMUST00000041871 1777 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Sept8-204ENSMUST00000121334 2801 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Gm26616-202ENSMUST00000195676 3107 ntBASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Kifc1-201ENSMUST00000114361 2260 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 S100a4-201ENSMUST00000001046 498 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Srd5a3-202ENSMUST00000113506 1241 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Gm13549-201ENSMUST00000118339 796 ntBASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Olfr1267-ps1-201ENSMUST00000118957 930 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Gm15329-201ENSMUST00000121408 155 ntBASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Mrpl20-202ENSMUST00000130188 442 ntTSL 3 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Asgr1-205ENSMUST00000146411 1188 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Nr5a1os-201ENSMUST00000146954 926 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Parvaos-201ENSMUST00000154848 1285 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Ighv2-1-201ENSMUST00000170946 353 ntBASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Ddt-202ENSMUST00000172820 574 ntTSL 2 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Shisa5-205ENSMUST00000197099 742 ntTSL 3 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 1700013M08Rik-202ENSMUST00000200080 798 ntBASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Gm15802-202ENSMUST00000209595 1094 ntTSL 5 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Gm37419-201ENSMUST00000210705 114 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Gm18968-201ENSMUST00000221319 862 ntBASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Gm7959-201ENSMUST00000221823 1078 ntBASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Fth1-201ENSMUST00000025563 866 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Ccl21a-201ENSMUST00000095114 870 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Gorasp1-201ENSMUST00000035099 3906 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Gm43334-201ENSMUST00000197740 1318 ntBASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Gm8899-201ENSMUST00000214635 1332 ntBASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Acnat1-202ENSMUST00000107697 1446 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Pbrm1-206ENSMUST00000112094 5154 ntAPPRIS P5 TSL 5 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Npy5r-202ENSMUST00000211920 1715 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Zc3hc1-201ENSMUST00000080812 1824 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Ebf3-203ENSMUST00000168203 3724 ntAPPRIS ALT1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Gm1110-201ENSMUST00000115261 1996 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Dnajc13-201ENSMUST00000035170 8012 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Fndc8-201ENSMUST00000018988 2166 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 A830082K12Rik-201ENSMUST00000123998 2203 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Hhipl2-202ENSMUST00000192527 2310 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Ank2-203ENSMUST00000182008 2474 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3aQ3ULJ3 Sgk3-201ENSMUST00000097826 2728 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Tmem181a-201ENSMUST00000088940 4405 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Srp54a-202ENSMUST00000220578 4498 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Fgd3-203ENSMUST00000110087 4698 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Sun3-202ENSMUST00000102909 1205 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Trav13d-1-201ENSMUST00000103588 396 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Asz1-201ENSMUST00000010940 1736 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Rfc4-202ENSMUST00000115337 416 ntTSL 5 BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Gm15374-201ENSMUST00000119313 844 ntBASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 BB557941-201ENSMUST00000126549 1097 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Sox5os3-201ENSMUST00000139351 906 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Gm12682-201ENSMUST00000144637 1081 ntTSL 5 BASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Gm17709-201ENSMUST00000174536 1096 ntBASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Gm18294-201ENSMUST00000176980 1748 ntBASIC12.24□□□□□ -0.45
Upf3aQ3ULJ3 Gm10100-201ENSMUST00000179726 363 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 56.4 ms