Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Gm9431-201ENSMUST00000119765 1051 ntBASIC11.47□□□□□ -0.57
Shox2P70390 Gm11573-201ENSMUST00000119956 394 ntBASIC11.47□□□□□ -0.57
Shox2P70390 Gm8908-201ENSMUST00000121633 1024 ntBASIC11.47□□□□□ -0.57
Shox2P70390 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC11.47□□□□□ -0.57
Shox2P70390 Ccdc103-202ENSMUST00000159834 1156 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Shox2P70390 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC11.47□□□□□ -0.57
Shox2P70390 Dnm3os-203ENSMUST00000185878 557 ntTSL 5 BASIC11.47□□□□□ -0.57
Shox2P70390 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC11.47□□□□□ -0.57
Shox2P70390 Gm18584-201ENSMUST00000203098 964 ntBASIC11.47□□□□□ -0.57
Shox2P70390 AC139382.1-201ENSMUST00000221402 498 ntBASIC11.47□□□□□ -0.57
Shox2P70390 Nkiras2-202ENSMUST00000051947 831 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Shox2P70390 Cdc26-201ENSMUST00000084525 819 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Shox2P70390 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Shox2P70390 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Shox2P70390 Adora1-202ENSMUST00000086465 4968 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Shox2P70390 Srrm4-202ENSMUST00000139425 2798 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Shox2P70390 Immt-206ENSMUST00000166975 2469 ntTSL 1 (best) BASIC11.47□□□□□ -0.57
Shox2P70390 Col9a1-201ENSMUST00000054588 3834 ntAPPRIS P1 TSL 1 (best) BASIC11.47□□□□□ -0.57
Shox2P70390 Sec14l1-202ENSMUST00000090433 4654 ntAPPRIS ALT2 TSL 1 (best) BASIC11.47□□□□□ -0.57
Shox2P70390 Lvrn-201ENSMUST00000025358 3219 ntAPPRIS P1 TSL 5 BASIC11.47□□□□□ -0.57
Shox2P70390 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Lrpap1-201ENSMUST00000030986 2981 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Ifi211-201ENSMUST00000009340 1785 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Caprin1-202ENSMUST00000111147 4069 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Kcnip3-203ENSMUST00000103215 2732 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Kcnip3-201ENSMUST00000028850 2728 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Gm5847-201ENSMUST00000178959 1595 ntBASIC11.46□□□□□ -0.57
Shox2P70390 Pgf-201ENSMUST00000004913 1582 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Lrrc74b-202ENSMUST00000065125 1539 ntTSL 2 BASIC11.46□□□□□ -0.57
Shox2P70390 2810032G03Rik-202ENSMUST00000163627 2514 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC11.46□□□□□ -0.57
Shox2P70390 Fam13c-201ENSMUST00000062883 3262 ntAPPRIS P3 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Rwdd2a-201ENSMUST00000034988 1355 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Asb6-201ENSMUST00000041726 4147 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Olfr139-204ENSMUST00000214111 1311 ntAPPRIS P1 TSL 5 BASIC11.46□□□□□ -0.57
Shox2P70390 Igfn1-203ENSMUST00000166193 8989 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC11.46□□□□□ -0.57
Shox2P70390 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC11.46□□□□□ -0.57
Shox2P70390 1600025M17Rik-202ENSMUST00000151426 547 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC11.46□□□□□ -0.57
Shox2P70390 Gm34767-201ENSMUST00000191813 1062 ntBASIC11.46□□□□□ -0.57
Shox2P70390 Zfp936-202ENSMUST00000200973 578 ntTSL 3 BASIC11.46□□□□□ -0.57
Shox2P70390 Ociad1-210ENSMUST00000202250 800 ntTSL 2 BASIC11.46□□□□□ -0.57
Shox2P70390 Gm32111-201ENSMUST00000207689 846 ntBASIC11.46□□□□□ -0.57
Shox2P70390 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC11.46□□□□□ -0.57
Shox2P70390 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC11.46□□□□□ -0.57
Shox2P70390 Pin1-201ENSMUST00000034689 3843 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Elane-201ENSMUST00000046091 984 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Inpp4a-202ENSMUST00000058307 2963 ntTSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Gm9996-201ENSMUST00000070359 913 ntBASIC11.46□□□□□ -0.57
Shox2P70390 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.57
Shox2P70390 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shox2P70390 Pop1-202ENSMUST00000079028 3275 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shox2P70390 Tcp10a-203ENSMUST00000129709 1778 ntAPPRIS P2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shox2P70390 AC126444.1-201ENSMUST00000225938 1768 ntBASIC11.46□□□□□ -0.58
Shox2P70390 Kcnj9-201ENSMUST00000062387 3857 ntAPPRIS P1 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shox2P70390 Pitpnm3-202ENSMUST00000108508 6450 ntAPPRIS ALT2 TSL 1 (best) BASIC11.46□□□□□ -0.58
Shox2P70390 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC11.46□□□□□ -0.58
Shox2P70390 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Shox2P70390 Hacl1-212ENSMUST00000167066 1566 ntTSL 5 BASIC11.45□□□□□ -0.58
Shox2P70390 Kcnh5-201ENSMUST00000042299 4058 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Shox2P70390 AU015791-201ENSMUST00000223443 1457 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Shox2P70390 AU041133-202ENSMUST00000201286 2634 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Shox2P70390 Brd3-201ENSMUST00000028282 5419 ntAPPRIS P3 TSL 5 BASIC11.45□□□□□ -0.58
Shox2P70390 Atp6v1c2-208ENSMUST00000221129 1425 ntAPPRIS P1 TSL 5 BASIC11.45□□□□□ -0.58
Shox2P70390 Srp54a-207ENSMUST00000110708 3646 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Shox2P70390 Cars-202ENSMUST00000105909 2462 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Shox2P70390 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Shox2P70390 Trem1-201ENSMUST00000048782 2993 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Shox2P70390 Ikbkg-204ENSMUST00000114128 1867 ntAPPRIS ALT2 TSL 2 BASIC11.45□□□□□ -0.58
Shox2P70390 AC149588.2-201ENSMUST00000228182 1859 ntBASIC11.45□□□□□ -0.58
Shox2P70390 Mdm1-203ENSMUST00000164077 2922 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Shox2P70390 Gm13050-201ENSMUST00000122149 1345 ntBASIC11.45□□□□□ -0.58
Shox2P70390 Gm8793-201ENSMUST00000183069 1303 ntBASIC11.45□□□□□ -0.58
Shox2P70390 Vars2-201ENSMUST00000043674 4425 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Shox2P70390 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Shox2P70390 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Shox2P70390 Polr2i-202ENSMUST00000108192 508 ntTSL 2 BASIC11.45□□□□□ -0.58
Shox2P70390 Colca2-201ENSMUST00000114427 1263 ntAPPRIS P1 TSL 3 BASIC11.45□□□□□ -0.58
Shox2P70390 Gm12058-201ENSMUST00000118614 437 ntBASIC11.45□□□□□ -0.58
Shox2P70390 Gm8876-201ENSMUST00000120768 1122 ntBASIC11.45□□□□□ -0.58
Shox2P70390 Gm8801-201ENSMUST00000173255 1064 ntBASIC11.45□□□□□ -0.58
Shox2P70390 Gm20404-201ENSMUST00000174032 621 ntTSL 3 BASIC11.45□□□□□ -0.58
Shox2P70390 Gm28911-201ENSMUST00000188837 117 ntBASIC11.45□□□□□ -0.58
Shox2P70390 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Shox2P70390 Gm37201-201ENSMUST00000191845 523 ntBASIC11.45□□□□□ -0.58
Shox2P70390 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC11.45□□□□□ -0.58
Shox2P70390 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC11.45□□□□□ -0.58
Shox2P70390 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC11.45□□□□□ -0.58
Shox2P70390 Olfr750-201ENSMUST00000048478 1132 ntAPPRIS P1 BASIC11.45□□□□□ -0.58
Shox2P70390 Gm8399-201ENSMUST00000082300 1117 ntBASIC11.45□□□□□ -0.58
Shox2P70390 A130006I12Rik-201ENSMUST00000091396 408 ntBASIC11.45□□□□□ -0.58
Shox2P70390 Lingo1-201ENSMUST00000053568 3295 ntTSL 1 (best) BASIC11.45□□□□□ -0.58
Shox2P70390 Sfxn5-201ENSMUST00000045846 3656 ntAPPRIS P2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Shox2P70390 Calr-201ENSMUST00000003912 2184 ntAPPRIS P1 TSL 1 (best) BASIC11.45□□□□□ -0.58
Shox2P70390 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC11.45□□□□□ -0.58
Retrieved 100 of 76,532 protein–RNA pairs in 73.1 ms