Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Yars-201ENSMUST00000106054 2909 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Gm44443-201ENSMUST00000204396 5633 ntBASIC17.66■□□□□ 0.42
Cux1P53564 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
Cux1P53564 Scarf1-201ENSMUST00000042808 2887 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Tnfrsf21-201ENSMUST00000024708 3626 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Cux1P53564 Taf1c-201ENSMUST00000093099 3236 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cux1P53564 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cux1P53564 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Cux1P53564 Sim2-201ENSMUST00000072182 3670 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cux1P53564 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Cux1P53564 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cux1P53564 Gm43167-201ENSMUST00000202001 1606 ntBASIC17.65■□□□□ 0.42
Cux1P53564 Cenpn-203ENSMUST00000212263 1616 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Cux1P53564 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC17.65■□□□□ 0.42
Cux1P53564 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cux1P53564 Gm7104-201ENSMUST00000179741 2532 ntBASIC17.65■□□□□ 0.42
Cux1P53564 Gtf2ird1-205ENSMUST00000100654 3156 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Cux1P53564 Acsf2-201ENSMUST00000103164 3154 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cux1P53564 Kif13a-201ENSMUST00000056978 6866 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cux1P53564 Snord17-201ENSMUST00000104526 238 ntBASIC17.65■□□□□ 0.42
Cux1P53564 Styxl1-203ENSMUST00000111162 726 ntTSL 5 BASIC17.65■□□□□ 0.42
Cux1P53564 Gm13707-201ENSMUST00000123663 600 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Cux1P53564 Gm11728-201ENSMUST00000150628 660 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Cux1P53564 A230006K03Rik-202ENSMUST00000154958 901 ntTSL 5 BASIC17.65■□□□□ 0.42
Cux1P53564 Gm16165-201ENSMUST00000160140 795 ntBASIC17.65■□□□□ 0.42
Cux1P53564 Gm16240-201ENSMUST00000161924 614 ntTSL 2 BASIC17.65■□□□□ 0.42
Cux1P53564 Gm24954-201ENSMUST00000178831 110 ntBASIC17.65■□□□□ 0.42
Cux1P53564 Gm20671-201ENSMUST00000144673 1731 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Cux1P53564 Vtn-201ENSMUST00000017488 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cux1P53564 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cux1P53564 Cdip1-203ENSMUST00000118703 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cux1P53564 5330413D20Rik-201ENSMUST00000208649 1416 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Cux1P53564 Ppp3cb-202ENSMUST00000159027 3831 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cux1P53564 Fstl5-201ENSMUST00000038364 5107 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Cux1P53564 4921524J17Rik-201ENSMUST00000047749 1587 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Cux1P53564 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.42
Cux1P53564 Sugp2-201ENSMUST00000093458 3874 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Cux1P53564 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Cux1P53564 Cyb5rl-201ENSMUST00000030364 2360 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Cux1P53564 Esyt1-201ENSMUST00000026427 3981 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cux1P53564 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cux1P53564 Zfp410-215ENSMUST00000222832 1859 ntTSL 2 BASIC17.64■□□□□ 0.41
Cux1P53564 Eef1d-207ENSMUST00000116440 896 ntAPPRIS ALT2 TSL 3 BASIC17.64■□□□□ 0.41
Cux1P53564 Gm11475-201ENSMUST00000118482 476 ntBASIC17.64■□□□□ 0.41
Cux1P53564 Gm15136-201ENSMUST00000120552 533 ntBASIC17.64■□□□□ 0.41
Cux1P53564 Apobr-203ENSMUST00000137646 457 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
Cux1P53564 Gm15952-202ENSMUST00000144542 556 ntTSL 3 BASIC17.64■□□□□ 0.41
Cux1P53564 Gm17115-201ENSMUST00000164075 885 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Cux1P53564 Znrd1-202ENSMUST00000172518 710 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cux1P53564 P4htm-204ENSMUST00000193621 1297 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Cux1P53564 Gm42660-201ENSMUST00000197733 947 ntBASIC17.64■□□□□ 0.41
Cux1P53564 CT030652.1-201ENSMUST00000227377 1235 ntBASIC17.64■□□□□ 0.41
Cux1P53564 Gm10254-201ENSMUST00000052888 867 ntBASIC17.64■□□□□ 0.41
Cux1P53564 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cux1P53564 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cux1P53564 Nacad-201ENSMUST00000045713 4892 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cux1P53564 Ikzf2-204ENSMUST00000188110 1365 ntTSL 5 BASIC17.64■□□□□ 0.41
Cux1P53564 Ikzf2-208ENSMUST00000190855 1359 ntTSL 5 BASIC17.64■□□□□ 0.41
Cux1P53564 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC17.64■□□□□ 0.41
Cux1P53564 Drg1-201ENSMUST00000020741 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cux1P53564 Npbwr1-201ENSMUST00000044180 3692 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Cux1P53564 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Cux1P53564 Kyat1-206ENSMUST00000113663 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cux1P53564 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC17.63■□□□□ 0.41
Cux1P53564 Ephb6-201ENSMUST00000114732 3762 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cux1P53564 Lancl1-202ENSMUST00000113979 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cux1P53564 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
Cux1P53564 Slc39a8-206ENSMUST00000180196 3383 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Cux1P53564 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cux1P53564 Gm12461-201ENSMUST00000120231 1239 ntBASIC17.63■□□□□ 0.41
Cux1P53564 Gm15982-201ENSMUST00000121681 554 ntBASIC17.63■□□□□ 0.41
Cux1P53564 Tnfrsf14-201ENSMUST00000123514 1018 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cux1P53564 Gm12052-201ENSMUST00000142151 933 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Cux1P53564 Tpi1-203ENSMUST00000149610 802 ntTSL 2 BASIC17.63■□□□□ 0.41
Cux1P53564 Mrgpra2a-201ENSMUST00000159004 1240 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cux1P53564 Olfr1432-201ENSMUST00000180978 930 ntAPPRIS ALT2 BASIC17.63■□□□□ 0.41
Cux1P53564 Abhd14a-204ENSMUST00000185334 1109 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Cux1P53564 Gm44698-201ENSMUST00000207382 384 ntTSL 5 BASIC17.63■□□□□ 0.41
Cux1P53564 AC134601.2-201ENSMUST00000221071 130 ntBASIC17.63■□□□□ 0.41
Cux1P53564 Dolpp1-203ENSMUST00000123202 2294 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Cux1P53564 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cux1P53564 Dolpp1-201ENSMUST00000028209 2251 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cux1P53564 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Cux1P53564 Zfp869-201ENSMUST00000080987 1590 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Cux1P53564 Vash2-201ENSMUST00000047409 4032 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cux1P53564 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cux1P53564 Anxa3-205ENSMUST00000198631 1523 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Cux1P53564 Gm17745-201ENSMUST00000212186 1692 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Cux1P53564 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Cux1P53564 Cspg5-204ENSMUST00000197850 7868 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Cux1P53564 Triml2-201ENSMUST00000163869 1467 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Cux1P53564 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Cux1P53564 Nrxn1-201ENSMUST00000054059 4697 ntTSL 5 BASIC17.63■□□□□ 0.41
Cux1P53564 Gm13135-201ENSMUST00000117628 3121 ntBASIC17.63■□□□□ 0.41
Cux1P53564 Gm11033-201ENSMUST00000127757 1445 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Cux1P53564 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Cux1P53564 Gm4753-201ENSMUST00000188327 1255 ntBASIC17.62■□□□□ 0.41
Cux1P53564 Gm43854-201ENSMUST00000200418 394 ntBASIC17.62■□□□□ 0.41
Cux1P53564 Gm18010-201ENSMUST00000203553 202 ntBASIC17.62■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 44.7 ms